KEGG   Latimeria chalumnae (coelacanth): 102364419
Entry
102364419         CDS       T02913                                 
Symbol
DDX6
Name
(RefSeq) DEAD-box helicase 6
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102364419 (DDX6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102364419 (DDX6)
   03036 Chromosome and associated proteins [BR:lcm03036]
    102364419 (DDX6)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102364419 (DDX6)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     102364419 (DDX6)
Chromosome and associated proteins [BR:lcm03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    102364419 (DDX6)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 102364419
NCBI-ProteinID: XP_005988179
Ensembl: ENSLACG00000017153
UniProt: H3BC85
Position
Un
AA seq 485 aa
MSTARTENPVIMGLSNQNGQLRGPVKPSGGPGGGGTQTQQQQMTNQLKNVSTINNGTQQQ
AQTLTTTLKPGDDWKKNLKIPPKDRRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEK
PSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELAL
QVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVD
QIQMIVLDEADKLLSQDFVQIMEEIIFTLPKNRQILLYSATFPLSVQKFMGSHLQKPYEI
NLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLG
YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETY
LHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPGNIDKSLYVAEYHSEPG
DGEKH
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgagcactgctagaactgagaaccctgttataatgggtttgtccaatcagaatgggcag
ctgaggggccctgtgaagcccagcggaggaccgggaggtggggggacccagacccagcaa
cagcagatgactaaccagttgaagaacgtcagcactattaacaatggcacccaacagcaa
gcacagaccctgactaccacgctgaaacctggtgatgactggaagaagaatttaaaaatc
cctccaaaggaccgaaggatcaaaacttcggatgtaacctctacaaagggcaatgagttt
gaagattactgcttgaaacgggagctgctgatgggaatttttgaaatgggatgggaaaaa
ccttctccaattcaggaggagagtattcccattgcattgtcgggtagagatatcctagct
agagctaaaaacggcacaggcaagagtggagcctacctcattcccctacttgaacggata
gacctgaagaaggacagcatccaagcattagtaatagtccctacccgagagctggccctt
caagtcagtcagatctgtatccaggtcagcaagcacatgggcggagtcaaggtcatggcc
actacaggaggaacaaacctgcgtgatgacataatgagattagatgatacagtgcacgta
gtaattgcaacccctggcagaatcttggatctgataaagaaaggagtggcgaaagtagac
caaatccagatgattgtattagatgaggcagataaattgctgtctcaggactttgtacag
ataatggaagagattatcttcactttacccaaaaatagacaaattctgttgtactcagct
actttccctctgagtgtacagaagttcatgggttcccatttacagaagccctatgagatt
aacctgatggaagagctaacattgaagggagtgactcagtactatgcctatgtaacagag
cgtcagaaagtacattgcctgaacaccctcttctccaggctccagattaaccagtctatc
atcttctgcaactcctcccaaagagttgaactgctggccaagaaaatctctcagctgggc
tattcttgtttctacattcatgctaaaatgagacaggagcatcgtaatcgtgttttccat
gattttagaaatggtttgtgccgcaaccttgtttgcactgatctgtttacccgtggtatt
gacatccaagctgtgaatgtggtcataaactttgactttccaaagctcgctgagacctat
ctccatcgcattggcagatctggtcgttttggccacctgggtcttgccatcaacctgatc
acttacgatgatcgatttaatctgaaaagcattgaggagcagctgggtacagagatcaaa
ccaatcccgggaaacattgacaagagcctgtatgtggcagagtaccacagcgagccggga
gatggggagaaacactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (37)   

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