KEGG   Latimeria chalumnae (coelacanth): 102366490
Entry
102366490         CDS       T02913                                 
Symbol
TARBP1
Name
(RefSeq) TAR (HIV-1) RNA binding protein 1
  KO
K15333  tRNA guanosine-2'-O-methyltransferase [EC:2.1.1.34]
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lcm03016]
    102366490 (TARBP1)
   03036 Chromosome and associated proteins [BR:lcm03036]
    102366490 (TARBP1)
Enzymes [BR:lcm01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.34  tRNA (guanosine18-2'-O)-methyltransferase
     102366490 (TARBP1)
Transfer RNA biogenesis [BR:lcm03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    102366490 (TARBP1)
Chromosome and associated proteins [BR:lcm03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    102366490 (TARBP1)
SSDB
Motif
Pfam: SpoU_methylase
Other DBs
NCBI-GeneID: 102366490
NCBI-ProteinID: XP_006011684
Ensembl: ENSLACG00000004337
Position
Un
AA seq 1628 aa
MNCTLADLLVAGCKDICALLDELCWDGESEALPEQEKVEAIRLLIQRFQHRQSGSGRTAA
SEVPAAFRAKLGDIALKLCLPLLQRVKGPRGEGGSRAPLASAVCRLLACCAGSCGGGGGG
GEAIQKVVAWAVAELLSGCEEASRGVLGAGGVEADLPVQVLASVVPGLSPAEDSALLGAA
AAAGVATLKTGSDGAAAKVLSRLLPALLEKDEPQALAAAEGLWGEISAWRRRQRGSSAAV
CRTVMCLSALSRYWLPAEARLGVFDLRPSAEFWEIVQLGLKHKDGICRKRAMYLLKGAVS
ASETLRDNIRSSQENENAQSLFWWSPEKNEILVNFWENYVLIMETLEENQVHVVRPVLPK
INKLMEAALPDNESRPQFHMSWFTCIYKRMFDSENRAIIKEGVGHFLDLSVMKNSSISQE
FAEFIVGPLMDALSDSSLYSRSAEQLMGSCPSLGVKLQRFFLTFVTSLPEESQGAFLLQL
VHNLASRHWSSIPLVMICQALAHIPPCKAWGAEGLHVIRNVLQCTMITHHVLLRGAAQCF
LLKTAMNLTDVERVTFPDVASFLMSLRTEESLCRGTILWTELCEWLHVNDRCFSPKDADA
AQLGKSELNAFVQELIKTYLEVPVVQEPGSNVPNSDLFEAALVAKMILLAADVEERTKTK
KVVEITDPSALSCFLSPLLDALRKLSTHAYLPTAKIDKSLRLLLKLLQMCSTSSATDKVM
IELQEPILSTAPEILEYMLRRLMGELYSVSDLAHSNLYIAIMTELVNLHIRVGWKRGFCI
YGFVSALTEASIHNLLKNKDEQEPDLATQIQKVVSMASLAWICEIEDQTRELQLDSLDSM
KKLIEFISSAQCNQILRKPKYSEEINSFSEEAAVASKGWGKVVARFVQDQWVCLHFIVKK
FSKFISSSAAQNPEHPTLPLAVLQRPVEMLQFALDALSILPSDHVLPVVHCMKILVPKVL
EPAESLCVKAIDLSWKVILSLGNNQLYFWSTLEAFINFAFDHKLLSVDINKRRGIFAKLN
EISRKIIEMSDTKTGMFNLLINHCCQLWMPTALKGEHHLEDHLTSARNYLEIFTEACIFG
PVFRRDQRIIQDVHTYIENLGEHCAANVAIKSSSRDDQYVRIYAIDFLCCLDGSNQIHKM
FIQDLVIQLLNKDRHITNAKVRYYGNSLQHRVKNRIWQTLLLLVPKLDQDFVKEVLERIH
QAGFANNQPSVKYLIEWVLILIMHRYPQFLDLFWECFTHDEDKLKTSICTFLSVLAHVEI
ILQNTLDKKQVLKKALDIVLPWCFHHNFNVRLYALVALKKVWIVCKRVCEDDFTALVPVI
ESSLKQLESMQGTGNAKRNWLRIQGHFFFGVFQPLKDFSLETIFCTFPNLSGLAEEESIP
VWKLSKFIGISASSAALLNNSRRELQNLQNLSDWVQQDRGSCLSEEGNQVDWTDVQKKII
PWKNTFPDLDPELIYQERAAKLGKSSNGLIVVASLIDKETNLGGLCRTSEIFGASALVVG
NICSVSDKQFQSLSVSAEQWLPVIEVKPSQLVEYLEKKKTEGYTIVGVEQTANSQDLSKY
CFPEKTLLLLGNEREGIPVNLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQIMK
QNCHTNVK
NT seq 4887 nt   +upstreamnt  +downstreamnt
atgaattgcactttagcagatctcctggtcgccggttgcaaggacatctgcgctttgctg
gacgagctgtgttgggatggagaaagcgaggctctccccgagcaggagaaggtggaggcg
atcaggcttctgattcagcggttccagcaccggcagagcggcagcggccggaccgccgcc
tccgaggtgccggcagccttccgcgcaaagctgggagatatagctttgaagctctgcctg
ccgctgctgcagcgggtgaaggggccgcgcggcgaaggcggcagccgggcgcctttggcg
agcgcggtgtgccggctgctggcttgctgcgcggggtcgtgtggtggcggtggcggcggc
ggggaggcgatccagaaagtcgtggcctgggccgtcgccgagctgctgtcgggctgtgag
gaagccagccgcggcgtgctgggcgccgggggcgtggaggccgacctccccgttcaggtc
ctggcgtccgtggtgccggggctgagcccggccgaggactcggcgctgctgggagctgcg
gcggcggccggagtcgcgaccctgaagacagggagcgatggcgccgccgccaaggtcttg
tccaggctcctgccggcactgttggaaaaggacgagccacaggcgctggctgccgccgaa
gggctgtggggtgagatcagcgcttggcggcggcggcagagggggagttcggccgccgtc
tgccggacggtgatgtgcctgagcgccctgtctcggtactggctccccgctgaagcccgg
ctcggagtctttgacctgcgcccctctgctgagttttgggaaatcgtgcagctgggcttg
aagcataaagacggcatttgccgcaagagagctatgtacttgttgaaaggagccgtgtct
gcctcggaaaccttgagagataatattaggagctcccaggagaacgaaaatgcacaaagt
ctgttttggtggtcaccagagaaaaatgaaatccttgtgaatttttgggaaaattacgta
ttaataatggagactttggaagaaaaccaggtacatgttgtaaggcctgttttacccaag
ataaacaagctaatggaagccgcgctgcctgacaacgaaagtcggccacagtttcacatg
tcgtggttcacctgtatctataaaagaatgtttgacagtgaaaaccgagcaataataaaa
gaaggtgttggtcacttccttgatctttctgtgatgaaaaactcctcaatatcacaggaa
tttgctgagtttattgttgggccattaatggacgcactttcagacagcagtctatacagc
aggtcagccgaacagttgatgggaagctgtccttcccttggagtgaagctgcagaggttc
tttcttacctttgttaccagtcttccggaagaaagccaaggtgcttttctgctgcagctt
gtccataatttggctagtcggcactggagttctatcccccttgttatgatatgccaggca
ctggcgcacattccaccatgcaaagcttggggagcagaaggccttcatgttataaggaac
gttttacagtgcaccatgattacacaccacgtcctcttgcggggagcagctcagtgtttc
cttctcaaaactgctatgaatttgacagacgtggaaagggtgacatttcctgatgtcgca
agctttctgatgtcacttagaacagaggagtcattatgtagggggacaatcctttggact
gagctctgtgagtggctgcacgttaatgacagatgcttcagtccaaaagatgctgatgct
gctcagctaggaaaatctgaactgaatgccttcgtacaggagcttataaagacgtacttg
gaagtccctgtagttcaagaacccggaagtaatgttcccaattcagacttgtttgaagca
gcacttgttgctaaaatgattcttttggctgctgacgtggaagaaagaacgaaaacaaaa
aaagttgtagagattaccgatcccagtgcactgagctgctttttaagtccccttcttgat
gctctaaggaagcttagcacacatgcttacctaccaacagccaagatagacaagagcctt
cggcttcttttaaagctgttgcagatgtgttcaactagcagtgccactgataaggttatg
attgaacttcaagaacctatactgtctactgcaccagaaattttagaatatatgctgaga
aggctgatgggtgaattatatagtgtctccgatctagctcacagtaacttgtacatcgca
ataatgacagagctggtgaacttacacataagagtaggttggaaaaggggattctgcatt
tatggttttgtgtctgcattaacggaagcctctattcataatttgctgaagaacaaggat
gagcaggaaccagaccttgctacacaaattcagaaagtggttagtatggcctccctagct
tggatctgtgagattgaagatcaaacaagggaactgcagcttgattccctggattctatg
aagaaattaattgaatttatttcatctgcacaatgcaaccaaatattaaggaagccaaaa
tatagtgaagaaataaatagctttagtgaagaagcagctgtggcttctaaaggctggggg
aaagtggttgcacgatttgtccaggatcagtgggtctgcttgcacttcattgtaaaaaag
ttttccaagtttatatcgtcctcagctgctcaaaacccagaacatcctacgttaccacta
gcggtgttacagcggccagtggaaatgctgcagtttgcgctggatgctctcagcattcta
ccttctgatcatgttttgccagttgtacactgtatgaaaatacttgttccaaaggttttg
gaaccagctgagtctttgtgtgtaaaagctattgatttgagttggaaggttatcttaagt
ttgggcaacaaccagctatatttttggtctaccttagaagcgtttatcaattttgctttc
gatcataaactccttagtgttgatatcaacaagagacgtggtatctttgcaaagctaaat
gagatctcacgtaagataattgaaatgtctgatacaaaaactggaatgtttaacctgctg
attaaccattgttgccaactatggatgcctactgctcttaaaggtgaacaccatttagag
gatcaccttacaagtgcaaggaattacctggagatttttactgaagcctgcatctttgga
cccgttttcaggcgagatcaaagaatcattcaagatgtgcatacctacatagaaaatctt
ggagaacactgtgctgctaatgtagccataaaaagttccagcagagatgaccaatatgtg
aggatttatgccattgacttcctgtgctgtttggatggatctaatcagattcataagatg
ttcattcaagatctggttatccagctgctgaataaagatcggcacatcacgaatgcaaaa
gtgcgatactatggaaactctcttcaacaccgggtcaaaaaccgaatatggcaaacactg
cttttgcttgttccaaaactggatcaggactttgtaaaggaagttttggaaagaattcat
caggccggatttgccaataatcagccatcagtgaagtacctgatagagtgggtccttata
ttgataatgcatcgttaccctcagtttcttgacctgttttgggaatgtttcactcatgat
gaagataaattgaaaacaagcatttgtacatttttgtctgtcttagcccacgttgaaata
attctgcagaacaccttagataagaaacaagtactgaagaaagctcttgacatcgttctt
ccttggtgtttccatcacaatttcaatgttcgactctacgcattggtagctcttaaaaag
gtctggattgtgtgtaagagagtttgtgaagatgattttacagctctggtgcctgtcatc
gagtccagcctgaagcagcttgaaagtatgcaaggcacagggaatgctaaaagaaactgg
ttgagaattcaaggacatttcttttttggtgtgtttcagcctctgaaagatttcagctta
gagacaatattttgcacctttccaaacttgtcagggttggcagaagaggaaagtatccct
gtttggaagcttagcaaatttataggtatttctgcaagttctgctgcattattgaacaac
agtcgacgtgaactgcaaaacctgcaaaacctttctgactgggttcaacaagaccgaggg
tcatgcctgagtgaagagggtaatcaagttgattggacagatgtgcagaaaaaaataatt
ccctggaaaaacaccttcccagatctggacccagaattgatttaccaggagcgtgctgct
aaactgggcaagtcgagcaatggtttgatagtggtggcttcacttattgacaaagagacc
aatttaggaggcttatgtcgtacaagtgaaatttttggggcttctgcattagtcgttggc
aacatatgctccgtaagtgataaacagttccaatctctcagtgtatctgcagaacaatgg
cttcctgtaatagaggtaaaaccatctcaacttgttgagtatttagaaaaaaagaaaaca
gaaggctatactattgtaggagtggaacagacagcgaacagccaagacttatcaaagtac
tgctttccagagaaaacgctactgctgttgggaaacgagcgtgagggaattccagttaac
ttgattcatcacctggacgtctgtgtagaaatccctcagcaaggcatcatacgatcactt
aatgttcacgtcagtggagctctgcttatttgggaatatactcgtcagcaaataatgaag
cagaattgtcacacaaatgtgaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (60)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (75)   

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