KEGG   Larimichthys crocea (large yellow croaker): 104923843
Entry
104923843         CDS       T04659                                 
Symbol
sh3rf3
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF3
  KO
K12171  E3 ubiquitin-protein ligase SH3RF [EC:2.3.2.27]
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lco01009]
    104923843 (sh3rf3)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lco04121]
    104923843 (sh3rf3)
Enzymes [BR:lco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104923843 (sh3rf3)
Protein phosphatases and associated proteins [BR:lco01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     104923843 (sh3rf3)
Ubiquitin system [BR:lco04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104923843 (sh3rf3)
SSDB
Motif
Pfam: SH3_9 SH3_1 SH3_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_2 zf-RING_5 zf-C3HC4_3 zf-RING_4 zf-C3HC4_4 zf-RING_11 Prok-RING_4 zf-rbx1
Other DBs
NCBI-GeneID: 104923843
NCBI-ProteinID: XP_010735335
Position
XVIII:9523650..9617849
AA seq 846 aa
MLTLSADMDESSSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLENIVSSRNELRCPEC
RILVDCGVDDLPANILLVRLLDGIKQRPQRGSNGGGGGGGGAGGRQSLAGGSLQGYAAGI
SASPPGSAIRELPVAIRSSPVKNIPALPCGKALYSYEGKEPGDLQFSKGDIIILRRKVDD
NWYHGELNGCHGFLPASYIQLLRPLSQTPPQGKALYDFEVKDKDQDKDCLAFSKDEVLTV
IRRVDENWAEGMLGDKIGIFPILYVELNETAKQLMEIDKPTPTNVPGPSSEPAPLGPCTP
GPSPCASPSNGNGSGHRRGEGKKNAKKRHSFSALSVSQRAAQLNNRHSMEISHPVLISSS
DPRAAARIQDASHPGPSPSSAGVLVPPKVASITSELLAHAKVQLPLNIYLALYAYKPQKA
DELELRKGEMYRVTEKCQDGWFKGTSLRTAASGVFPGNYVTPVSRAPFGAGASRGSCLSS
PVGGGGSGSSQVGSKITDPSSPGSPGPSSSRPSTPLVNSVNSIVSPASSPQTAAAQLKNC
LRSSQHTVNQARTSMQLVHSPPAGSPERPTVALSPLRPQSSSPSRCPGQSGRPLSMVSPG
PSLGPSPLSSPASRPLLPLSSPLSSLTPPNVSAVLLNGESASPLQPPLPGPSHAPTQGAL
APKAEKKERKAGGLLKLLSGAAAKKKPRSPPSSPPTHDPSLAGHGAVATDPTHHPHHHHH
HARSGSCPMASQGRAGSCPIESDMAGAIGLEPLHRKSGSLDTNFPRSPPTTRVGNALMVL
RPEPKPLSRERYRVVVPYPPQSEAEIELREGDVVFVHKKREDGWYKGTLQRTGQTGLFPS
SFVESF
NT seq 2541 nt   +upstreamnt  +downstreamnt
atgctcaccctctccgccgacatggacgagtcttcgtcgctgctggatctgctggagtgc
tcggtgtgcctggagcgcctggacaccacagccaaggtgctgccgtgccagcacaccttc
tgccgccgctgcctggaaaacattgtcagctcgaggaatgagctccgttgcccggagtgc
cgcatcctggtggactgcggggtggacgacctgccggctaacatcctcctggttcgcctc
ctggacggtatcaagcagcggccccagcgagggagcaacggaggaggaggaggaggagga
ggagcaggcggcaggcagtccctggccgggggctcgctgcaggggtacgcagccgggata
tccgcttctcccccgggcagtgcgatcagagagctgcccgtagccatcaggagctcccct
gttaagaatatcccagcgctgccttgtggtaaagccctctactcctacgaaggaaaagaa
ccgggtgacctccagttttccaagggtgacatcatcatcttgcgacgcaaagtcgatgac
aactggtaccacggcgagctcaacggttgccatggtttcttgcccgctagttacatccag
ttgctgcgtccgctgagccaaaccccaccccagggcaaagcactgtacgactttgaggtc
aaagataaagaccaggataaagactgtctggccttcagcaaggatgaggtactgactgta
atcaggcgagtggacgagaactgggcagaaggcatgctgggagacaagattggcatcttc
ccaattctctatgtggagttaaatgaaacagccaagcagctgatggagatcgacaagccc
acgccaactaacgttccaggtccgagctctgagccagccccgttgggaccatgcactcct
ggtccctccccttgcgcctccccatccaatggaaatggctctggccatcggagaggggaa
gggaagaaaaacgccaagaagaggcattcgttctcggcgctgtccgtcagccagagggcg
gcccaactcaacaacagacacagtatggagatctcccaccccgtcctcatcagctcctct
gatcccagggctgctgcacgcatccaggatgcatctcacccgggtccctctccctcctcg
gcaggggttctggttccccctaaagtggcttccataacctctgagctgctggcccatgct
aaggtgcagctgccactcaacatatatctggctctatacgcctacaagcctcagaaagct
gacgagcttgaacttaggaaaggggagatgtaccgggtgacagagaaatgtcaagacggg
tggttcaaaggcacctcgctgagaaccgctgcctccggtgtcttcccaggaaactacgtc
acccctgtgtccagggctccatttggagctggtgcttctcggggctcgtgtttgtccagt
ccagtgggtggaggaggaagcgggagcagtcaagtggggagtaaaatcaccgacccatcg
tccccagggtccccgggaccctcatcgtcccgtccctccaccccactggtaaactcagtc
aactctatcgtcagtcctgcctcctcgccgcaaactgccgccgcccagctgaagaactgc
ctgcgctccagtcagcatacggttaaccaggcacgcacctcaatgcagctggtccacagt
cctccggctggaagcccagagcgccccacggtggctctctcccccttgcgtcctcagagt
tcctccccctcacgctgccccggccagtcgggccgtcctctctccatggtgtctccagga
ccgagcttagggccctcacccctctcttcccctgcctcacgtcccctgctgcctctctcc
tcccctctctccagcctcacacctcctaacgtgtcagcggtgctcctcaacggggaatca
gccagtcccctgcagccaccattaccgggcccctcgcacgcccccacccagggcgccctt
gcacccaaagcagagaagaaggagagaaaagcaggaggtctattaaagctcctgtcgggg
gcggcagccaagaagaaacctcgctcccctccctcctccccgcccacccacgacccctca
ttggccggtcatggcgccgtggccaccgaccctacccatcatcctcaccatcatcaccac
cacgcccgctcaggttcatgtccgatggcatcgcaggggcgagccggctcctgtccgatc
gagagtgatatggcaggggccataggactggagcctctgcacaggaagtccggttccctg
gacaccaatttccccaggtcgcccccgacaacacgtgttggcaatgctctgatggtctta
cggcctgaacccaaacccctgtccagagagaggtatcgtgtggtggtgccctacccacca
cagagcgaggcggagatcgagctgcgggaaggggacgtggtgtttgtccataagaagagg
gaggatggctggtacaaaggcaccctgcagaggacaggacagaccggcttgtttcccagc
agcttcgttgagagcttctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (57)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (79)   

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