KEGG   Larimichthys crocea (large yellow croaker): 104923957
Entry
104923957         CDS       T04659                                 
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03020  RNA polymerase
lco03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104923957 (polr2a)
  09124 Replication and repair
   03420 Nucleotide excision repair
    104923957 (polr2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lco03021]
    104923957 (polr2a)
   03400 DNA repair and recombination proteins [BR:lco03400]
    104923957 (polr2a)
Enzymes [BR:lco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104923957 (polr2a)
Transcription machinery [BR:lco03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     104923957 (polr2a)
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104923957 (polr2a)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 104923957
NCBI-ProteinID: XP_027143552
Position
XIV:complement(3980301..3992781)
AA seq 1952 aa
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNAHVQSALEREFDKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVDGVQELSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYT
PTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSPRYTPQSP
TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSP
TSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK
GSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq 5859 nt   +upstreamnt  +downstreamnt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacggagggggggatcaaa
taccccgagacaacagaaggaggacgtcctaaactcggtggccttatggacccgagacaa
ggggtcatagaacgaactgggagatgtcagacatgtgcaggcaacatgacagaatgcccc
ggccactttgggcacatagagctggcgaagccagttttccatgtcggcttcgtgacaaag
atcatgaaggttcttcgatgcgtctgcttcttttgctctaagctgttagtggattcaaac
aatccgaagatcaaagacatcttggtgaaatctaaagggcagcccaggaagcgtctcacg
cacgtctacgagctgtgcaaaggcaaaaatatctgcgaaggaggggaggagatggacaac
aaattcggaatggaacagcaggagaccgaggaggacatcaccaaggagaagggccacggt
ggctgtggacgctaccagccacgtatcagacgctccggcttggagctgtacgccgagtgg
aagcacgtcaacgaggattcgcaggagaagaaaatcctgctgagtcccgagcgcgtgcac
gagatcttcaagcgcatctccgacgaagaggacgtcatcttgggcatggaccccaagttc
gcccgacctgaatggatgattgtaactgtgctgccggtgccgccgctggctgtcaggcct
gctgtagtcatgcaggggtctgctcgcaaccaggatgacttgacccacaagctcgcagac
atcgtcaaaatcaacaaccagctgagaagaaacgagcagagtggtgcggcagctcacgtc
atcgctgaggacgtcaaactgctccagtttcacgtcgccaccatggtggacaacgaattg
cccggcctgccaagggcgatgcaaaagtctggccgtcctctcaaatccataaaacagcgt
ctaaaggggaaggaggggcgagtccgaggtaacctcatgggcaagcgtgtggacttctcc
gcccgaactgtcatcacgcccgaccccaacctgcaaatcgaccaagtaggcgtaccgcga
tccatcgcagccaacatgaccttccctgaaatcgtcacaccctttaatatcgacagatta
caagagctggtgcgaagaggcaacagccagtacccaggagccaaatacatcatccgtgac
aacggagacagaattgacctgcgattccaccctaaaccaagtgacctccatctgcagatt
ggctacaaggtggaaagacacatgtgtgacggagacatcgtcatcttcaaccggcagcct
acactacataaaatgtccatgatggggcacagggtccggatcctgccgtggtccacgttt
cgactcaacctcagtgtcaccaccccatacaatgctgactttgacggggatgagatgaac
ctccacctgccccagtccctcgagacgagggcagagatccaggagctcgctatggtgccg
cgtatgatcgtgacaccccagtctaacagacccgtcatgggtatcgtgcaggatacactc
acggctgtccgcaaattcaccaagagagacgtcttcttagagcggggtgaagtgatgaac
ctcctcatgttcctctccacttgggacgggaaagtgcctcagccggccatcctcaagccc
cgtcctctgtggacgggcaagcagatcttcagcttaatcattcccggacacatcaacgtg
atccgcacacacagcacccatcctgacgatgaagacagcggcccttacaagcacatctca
cccggtgataccaaggtcatagtggagaacggagagttgatcatgggcatcctgtgtaag
aaatctctgggaacctccgccggctccctcgtccacatctcctatctggagatgggccac
gacatcacccgactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtatcggtgactccattgctgatgcaaagacgtaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaggtcattgagaaagcccacaac
aacgagctggagccgactcccggtaacacactaaggcagacctttgagaaccaggtgaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggctctaagggatcaaagattaacatctcc
caggttatcgccgtggtggggcaacagaacgttgagggtaaacgaatccccttcggcttc
aaacaccgcactctgcctcacttcattaaggatgattacggccctgagagtagaggcttt
gtggagaactcctacctggctggcctgacgccaaccgagttcttctttcacgccatggga
ggcagagagggtctgatcgacacagccgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggttcagctgcgttacggcgaggacggcctggcgggagaaaatgtggag
ttccaaaacgtggcaacactcaaaccctcacacaaggcctttgaaaagaagtttaagttc
gactgcaccaacgagcgagcgctgaggcgcatgctgcaggaagacgtcgtaaaagacgtg
ctgaccaatgcccacgtgcagagtgccttggagagggagtttgataagatgaaggaggac
agggaggtcctccgagccattttccccaccggggacagtaaggtggtgctgccgtgcaac
ctggccagaatgatctggaacgctcaaaagatcttccgcatcaacactcgaaccccaaca
gacctcaatcctctgagggttgtcgacggtgtccaggagctgagtaagaagctcgtgatt
gtgaatggcgacgacccgctgagcagacaggcgcagcagaacgccaccctgctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgacggaggagttccgtctttccacc
gaggcgttcgactggctactaggagagatcgagaccaaattcaatcagtccattgcccat
ccaggtgaaatggtcggtgctctggctgctcagtcgctgggagagccagccacccagatg
accctgaacactttccactacgccggtgtgtcagccaagaacgtaacactcggtgtgcct
cgtctaaaggagttgatcaacatctcaaagaggcccaaaacaccctccctgactgttttc
ctgctgggtcaggcggcacgtgacgctgagagggccaaggacatcctctgtcgactggag
cacaccaccctccgaaaggtgacggccaacacagccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggttaacgtctactacgagatgcccgacttt
gacgtgacgcgcatttcgccctggttgctgcgcatcgagctcgaccgcaagcacatgacc
gaccgcaagctgactatggagcagattgcagagaagatcaacgcaggtttcggagatgac
ctgaactgtattttcaatgacgacaacgcagagaagctcgtcctgcggatcaggatcatg
aacagcgacgagaacaagttccaagaggacgaggaggtggtggacaaaatggatgacgat
gtgtttttgaggtgcatcgagtccaacatgctaacagacatgacccttcaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagaccgacaataagaagaagatcatcatc
acagaggacggtgagttcaaggccctgcaggagtggatccttgagacagacggagtgagc
ctcatgagggtcctcagcgagaaggatgtagatcccgtcaggaccacctccaacgacatt
gtggagatcttcacggtgttgggaatcgaggcagtgcgaaaggctctggagagggagttg
taccacgtcatctccttcgacggttcctacgtcaactaccgtcacttggctctgctttgt
gacaccatgacgtgccgcggtcacttgatggccatcacacgtcacggcatcaaccgtcaa
gacacaggaccgctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcatcccacggtgagagcgaccccatgaagggtgtgtcggagaacattatgctcggccag
ctcgctccagctgggacagggtgttttgatctgctgttggatgctgagaagtgtaaatat
ggcatggagatccccacgaacatacccggcatcagcgtggctggacccactggcatgttc
tttggcacggtgccgagccccatgagcggtatgtcacctgccatgaccccgtggaacaca
ggagcaacaccagcctacggtgcctggtcccccagtgttggaagcggcatgacccccgga
gcagcaggtttctctcccagcgcagcgtcagatgcaagtggcttctctccaggctactcg
ccggcctggtctcccactcctgggtctccaggatctccaggacctgccagcccatacatc
ccatctccaggtggagccatgtcacccaactactcacccacctccccagcctacgagcct
cgctcgcctggaggctacaccccacagagtcccggctattccccaacatctccctcctac
tctcccacttctccctcttactcccccaccagccccaactacagcccgacatcaccttcc
tactcacccacctcgcccagctattcccctacctccccctcctattctcccacgtctcca
tcttattcaccaacgtctccctcctactcccctacctccccgtcttactcccccacgtcc
ccctcctactctcccacctcaccaagctacagcccgacgtcgccgagctacagcccgacg
tcacccagctactcgcccacctcaccttcatactcccccacctccccgtcctactccccc
acctctccttcctactcgccgaccagcccaagctacagccccacatcaccaaactacact
cccacctcgcccagttactcccccacctctccctcctactcccctacatcaccctcttac
tctccaacctcccccaactacaccccgaccagccccaactactcccccacctctccctcg
tactcccctacctctccatcctactcaccctccagtccacgttacaccccgcagtcacct
acctacacaccgagctccccctcctactcccccagctccccctcctactcccccacttcc
cccaaatacaccccgacttcaccctcctacagccccagctccccggagtacacccccacc
tcacccaaatactcccccacctcgccaaagtactccccaacgtcgccgaagtactcgccg
acttctcccacctattccccgacgactccaaaatacagccccacctctcctacctactcc
cccacctctcccacttacacccccaccagtcccaaatactcccctacctcccctacctac
tccccaacttcacccaagtactcgcccacgtctcctacgtactcaccaactagtccgaaa
ggttccacgtacagccccacctcccctggatacagccccacctcgccgacctacagcccg
gccatcagccccgacgacagcgacgaggagaacaactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (131)   
   KEGG ORTHOLOGY (1)   
   RefGene (127)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (148)   

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