KEGG   Larimichthys crocea (large yellow croaker): 104931805
Entry
104931805         CDS       T04659                                 
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
  KO
K12035  tripartite motif-containing protein 71 [EC:2.3.2.27]
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104931805 (trim71)
   04121 Ubiquitin system [BR:lco04121]
    104931805 (trim71)
Enzymes [BR:lco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104931805 (trim71)
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104931805 (trim71)
Ubiquitin system [BR:lco04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    104931805 (trim71)
SSDB
Motif
Pfam: NHL Filamin DUF5128 zf-B_box SGL zf-RING_5 zf-C3HC4 zf-RING_2
Other DBs
NCBI-GeneID: 104931805
NCBI-ProteinID: XP_010745194
UniProt: A0A0F8ACM3
Position
XIII:complement(2030607..2059140)
AA seq 831 aa
MASFPDSDLQTCPLCKELCGSSAPISSSSSTSSSSSHTSTSSSQTTRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLRCPTCDQKVSISEAGVDSLPSSNFLFSNLLDVVVSSEEQIQNKNG
HHHHRSGIGGGSSGFHHSHGGLLHPHHLGEPQCSSCDEENPATSHCLDCQEYLCDNCVRA
HQRVRLTKDHFIECLGDNLHLGRVNANSNSGQPGVSVSLAQSLQNNFALLSLFQDRMSFC
QHHDNEVFLFFCETCSVPICRECSVGRHMGHTFVYLQDAVQDCRAITIQLLADAQQGRQA
VQLSMEKVQAMAEQVEIKAKVVQTEVKALVLRHKKALEERECELLWKVEKIRQVKAKSLY
LQVEKLHQSLTKLDSTIAAVSQVLDEGHHLDVLLARERMLTQIHELKALRGLLQPQEDDR
FMFTPPDQALYIAVQSMGLISSGAFAPVTKAHGEGLKTALRGKPASFTVIGYDHDGEPRL
SGGDAVSAVVMSATDGSLSAAEVTDHQNGSYTVSYLPKCEGEHLVSALVCNQHIQGSPFK
VMVKSRRSYGSLGTQVSSFGCEGEGDGQLCRPWGISVDKEGYVVVADRSNNRIQIFKPCG
AFHHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFEGQFLLKFGEKGTKN
GQFNYPWDVAVNSEGKILVSDTRNHRVQLFAPDGSFLNKYGFEGALWKHFDSPRGVAFNH
EDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRIIVADSRNHR
VQVFEPNGNFLCKFGTQGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq 2496 nt   +upstreamnt  +downstreamnt
atggcttcgtttccagactcggacctgcagacgtgtccgctctgcaaagagctctgcggc
tcctctgctcctatttcctccagctcttctacctcctcatcttcctcgcatacctcgacg
tcctccagccagaccaccagaaggctccacgtcctgccctgcctccatgccttctgcagg
cagtgcctggagggtcagcgaagtcctggggacccgctgaaactgcgttgccccacctgc
gaccagaaggtgtccatctctgaagccggcgtggactccctgccttcctccaacttcctc
ttcagcaacctgctggacgtggtggtgagctccgaggagcagatccagaacaagaacggc
caccaccaccatcgaagtggcatcggcggaggctcctcgggcttccatcattctcacgga
ggcctgctgcaccctcaccacctgggagagcctcagtgcagctcctgcgacgaggagaac
ccagctacctcccactgccttgactgccaggagtatctgtgcgacaactgtgtgcgggca
caccagcgggtgcggctgaccaaggaccacttcatcgagtgcctgggagacaacctccac
ctgggccgggtcaacgccaacagcaactcgggacagccgggggtgtcggtgtctctcgcg
cagtccctgcagaacaactttgccctgctgtccctgttccaggatcgcatgagcttctgc
caacaccacgacaatgaggtgttcctgttcttctgtgaaacctgctcggtgcctatctgc
agggagtgcagcgtgggccgacatatgggccacaccttcgtttatctacaagacgccgta
caggactgcagggccatcaccatccagctgctggcagatgcacagcagggacgacaggcc
gtgcagctaagcatggagaaggtccaggccatggcggagcaagtggagatcaaagccaag
gtggtgcagactgaagtaaaggccctcgtcctccgacacaagaaagcgctggaggagagg
gagtgtgaactactgtggaaggtggagaagatccgtcaggtgaaggccaagtctctgtac
ctgcaggtggagaaactgcatcagagtttgaccaagttggacagcaccatcgctgcggtt
agccaggtgctggacgagggccaccaccttgacgtgctgctggccagggagcgaatgctc
acccagatccatgaactcaaggctctgaggggcctgctgcagccgcaggaggacgaccgc
ttcatgttcactcctccagaccaggctctctacatagccgtccagtcaatggggctcatc
agcagtggtgcctttgccccggtcactaaagcccacggtgagggcctaaaaactgcgctt
cgcggtaagccggcctcattcactgtgatcggatatgaccatgacggcgagccacgtctt
tccggcggggacgcagtgtccgctgtagtcatgtcggccacagatggcagcctgtctgca
gcggaggtaacggaccaccagaatggctcgtacaccgtcagctacctgcctaaatgtgag
ggggagcacctcgtgtcagcgttggtgtgtaaccagcacatccagggcagcccgttcaag
gtgatggtgaagtccaggcggagctacggctccctgggcacccaggtgtcatcattcggg
tgcgagggggagggagatggtcagctgtgtcgtccatggggcatcagcgtggacaaggag
ggatacgtagtggtggccgatcgcagcaacaaccgcatacagatattcaagccttgtggt
gccttccaccataagtttggctctctgggttcccggcctggtcagtttgatcgtccagca
ggggttgcatgtgacagtcagagacgaatcattgtggctgataaggacaatcaccgtgtg
caggtgtttacttttgagggccagttcctgctgaagtttggggaaaagggtaccaagaat
gggcagttcaactatccctgggatgtggctgtcaactctgagggtaagatcctggtctca
gacaccaggaaccaccgcgtgcagctgtttgcccctgacggctctttcctcaacaagtac
ggcttcgaaggggccctgtggaaacactttgactctcccagaggagtggcctttaaccac
gaagaccacctggtggtgaccgacttcaacaaccaccggctcttggtcatcaggccggac
tgccagtcggctcgctttctgggctctgagggcaccgggaacgggcagtttctgcggcct
cagggcgtcgcagtggaccaggagaaccgcatcatcgtggcagactcccgcaaccatcga
gtccaagtgtttgagcccaatggaaactttttatgcaaatttggcacacaggggagtggc
tttggacagatggatcgcccctccggtgtggctgtgacgcctgacggagtcattgtggtg
gttgactttggaaataatcgcatcctcaagttctaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (39)   

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