KEGG   Larimichthys crocea (large yellow croaker): 104932972
Entry
104932972         CDS       T04659                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104932972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lco03041]
    104932972
   03009 Ribosome biogenesis [BR:lco03009]
    104932972
Enzymes [BR:lco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104932972
Spliceosome [BR:lco03041]
 Complex A
  U1 snRNP components
   U1 related factors
    104932972
 Complex B
    104932972
Ribosome biogenesis [BR:lco03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    104932972
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_C_2 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 104932972
NCBI-ProteinID: XP_010746618
UniProt: A0A0F8BJR1
Position
X:complement(27862252..27870500)
AA seq 636 aa
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHPDATRRPLQEVEQYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIGKQNWT
EPTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCSDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGNGPKSAFGGNKAQNG
GSYGGNSGNSSSSYGNNNYSNSNGQGNFGAPTNQVGAFGNQSFQGPPQFGGMQRAAQNGM
NHPPFPFNSQPPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgcctggattttcagacagggatcgtggcagagacagagggtatggtggaggaccccct
cgttttggtggtggtggtggaggaggcaataggggcggacctcctccaggaaagtttggc
aaccccggtgagaggctgcgaaagaagcactggaacctggatgagcttccaaagtttcag
aagaacttctaccaggaacatcctgatgctactcgcagaccacttcaagaggttgaacag
taccgaagaagcaaagaagttacagtcaaaggcagagactgccccaaaccaattgtaaaa
ttccatgaagctgcttttccaagctatgtcatggatgtcattggcaaacagaattggact
gaaccaactcccattcagtctcaggggtggccagttgccctgagtggcaaagacatggtt
ggcatcgctcaaactgggtctgggaaaacccttgcataccttctgcctgcaattgtgcac
attcaacatcagccattcttggagcatggagatggacctatctgcttggtgctggcacca
acccgtgagttggctcagcaggtgcaacaagtggctgctgaatacggcagggcctcccgt
ctcaagagtacctgcatctatggcggtgcacccaaaggaccccaaatcagggaccttgag
aggggtgtggagatctgcattgctaccccaggtcgtctcattgacttcctggagtgtggt
aagactaatttgcgtcgttgcacttatctggtgttggatgaagctgaccgcatgcttgac
atgggatttgaacctcagatccgcaagatagtggaacaaattcggccagaccgtcagacc
ctgatgtggagtgccacctggcctaaggaagttcgccagctggctgaggacttcctaaaa
gactacgtccagatcaatattggtgcactgcagctcagcgccaatcacaacatcctgcag
atagtggatgtttgcagtgatatggagaaggaggacaaactgatccgtctgctggaggag
ataatgagtgaaaaggagaacaagaccattatttttgtggagaccaaaagacgttgtgat
gagctcaccaggaggatgagaagagatgggtggccagcaatgggaattcatggagataaa
agtcagcaggagagggactgggtccttaatgagttcagatatggtaaagctccaatcctc
atcgcaacagatgtggcctcccgtggcttagatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctccgaggattatatccaccgcattggacgcacagcccgaagt
caaaaaacgggcacagcctacactttcttcacccccaacaacatgaaacaagccagtgac
ctgatctctgtgctccgcgaggccaaccaggccattaacccaaagctgatccagatggca
gaggacagaggaggtcgtggaagggggggaagaggtggctacaaggatgaccgtcgcgat
aggtattccgggggtgggaggagcaattttggcggtagcagctacagggacagggacagt
gatagagggtttggcaatgggccgaaaagtgccttcggtggcaataaggcccaaaatggt
ggcagctatggaggtaacagtggtaactctagtagtagctatggcaacaacaattacagc
aacagcaatggacagggtaattttggtgctccgacaaaccaggtgggtgcctttggtaac
caaagcttccagggccctcctcagttcgggggaatgcagagggctgctcagaatggcatg
aaccacccgccgttcccattcaactctcagccaccaccaccacaggcccaacaaccacca
cccccaccaccaatggtgccctaccccatgccaccacccttccctcagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (53)   

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