KEGG   Larimichthys crocea (large yellow croaker): 104933609
Entry
104933609         CDS       T04659                                 
Name
(RefSeq) putative ATP-dependent RNA helicase an3 isoform X3
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:lco00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    104933609
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104933609
   03041 Spliceosome [BR:lco03041]
    104933609
   03036 Chromosome and associated proteins [BR:lco03036]
    104933609
Enzymes [BR:lco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104933609
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104933609
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     104933609
Spliceosome [BR:lco03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    104933609
Chromosome and associated proteins [BR:lco03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    104933609
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-GeneID: 104933609
NCBI-ProteinID: XP_010747407
Position
IX:12354383..12380719
AA seq 716 aa
MSHVVVDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDASKNDSPGWDGGRSNG
FVNGYHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFNQPLQNAGFRSYDNKDGSWGG
PPRDAAYNSFGGQSDRSKGTFFNDRGAGSRGRYERGGFSGGNTRWAEDSRDDDWSKPTAP
NERLEHELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFHDVDMGEIVMGNINLSRYTR
PTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGDALQAAKNSGQENG
RYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRELERGCH
LLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQT
MMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEETDKRSFLLDLLNAT
VIPSEVQENVTEAPEKPGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDRE
EALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA
TSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSNRGRSKRFSGGFGARDYR
QTSGGSGSFSSNRGGRNTGGHGGNRGFGGGFGGNFYGNDGYGGNYSHSGSVDWWGN
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgctgacggacaaggcggaggaacaggcaggcgttacattccacctcacttg
agaaacaaagatgcctctaaaaatgattcacccggatgggacggtgggcgcagcaatgga
tttgtgaatggttaccacgacaaccgcacaaatgggggctttggagggcgaggaccccct
cgcaatgatagaggtgggcgcggcgcctaccgtggtaacaggggtggaggctcgtttaat
caaccattgcaaaatgcagggttccgcagttacgacaacaaagatggcagctggggagga
cctccaagggatgctgcctacaacagctttggggggcaatctgatcgatccaagggtacc
ttcttcaacgaccgtggggcaggctcaagaggaagatatgagcgtgggggcttttctggt
ggaaacacccgctgggcggaggactccagagatgatgactggtccaagcctacagctccc
aacgagcgcctggaacatgagcttttctcaggaagcaacactggcataaactttgagaag
tatgatgatattcctgtggaggccactggaagcaactgcccgccacacattgaaagtttc
catgatgttgacatgggggagattgtcatggggaacatcaacttgagtcgttacactcgt
cccaccccagtccagaagcacgctatccccatcatcaagtcgaagagagacctgatggcc
tgcgcccagactggctccggtaagactgctgctttcttgctgccagtgttgagtcagatc
tacactgatgggccaggagatgctctgcaggctgccaagaacagtggacaggagaatgga
aggtatggccgtcgtaagcaatacccgatctctctcgtcctggctcccaccagagaactg
gctttgcagatctatgatgaggcgagaaagtttgcctatcgatcacgtgtgcgtccttgc
gtggtatatggtggtgctgatattggccagcagatcagggaattggagagaggctgtcac
ctgctggtagccacacctggacgtctggttgatatgatggagaggggaaagatcggtctg
gactattgcaactacttggtcctggatgaggctgaccggatgttggacatgggttttgag
ccacagatcagacgcattgtcgagcaagatacaatgccacctaaaggcattcgccagacc
atgatgttcagtgccacgttccctaaggagatccagatcctggctcgtgactttctggag
gactacattttcttggcagtggggcgtgttggttccacttcagagaacatcacacagaag
gtggtctgggtagaggagactgacaagagatccttccttcttgacctcctcaatgccact
gttattcccagtgaggttcaggaaaatgtgacagaggccccagagaaaccgggcaaagac
tcgctgactctggtgttcgtcgaaaccaagaaaggagcagacgctttggaagacttcctt
taccatgagggttatgcctgcaccagcattcacggggacagatcccagagagacagagaa
gaagctctgcatcagtttcggtctggacgctgccccatcttggtggctacagctgtggct
gctcgaggtctggacatcagcaatgtgaagcacgttattaactttgatttgcccagtgac
attgaggaatacgttcaccgtattggccgtacgggacgtgtgggcaaccttggtctggcc
acgtcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacattttggtg
gaggccaagcaggaggttccctcctggcttgagagccttgcctatgagcaccagcacaag
agcagcaaccgtggacgctctaagaggttctctggcggtttcggagctagagactaccgt
cagacgtctggtggctctggaagcttcagtagcaaccgtggaggccgtaacactggaggc
catggagggaaccgtggctttggtggtggctttggtggcaacttctacggcaatgatggc
tatggaggaaattacagtcactctggtagtgtggattggtggggcaactag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (4)   
   Pfam (4)   
All databases (63)   

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