KEGG   Larimichthys crocea (large yellow croaker): 104940289
Entry
104940289         CDS       T04659                                 
Symbol
kdm4a
Name
(RefSeq) lysine-specific demethylase 4A
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lco03036]
    104940289 (kdm4a)
Enzymes [BR:lco01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     104940289 (kdm4a)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     104940289 (kdm4a)
Chromosome and associated proteins [BR:lco03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    104940289 (kdm4a)
SSDB
Motif
Pfam: JmjC Tudor_2 zf-HC5HC2H_2 PHD_2 JmjN zf-HC5HC2H Tudor_5 PHD DUF4537 LBR_tudor
Other DBs
NCBI-GeneID: 104940289
NCBI-ProteinID: XP_010755159
Position
XVII:complement(25141464..25157937)
AA seq 1046 aa
MTTDTPAQSVGSRIMTFTPSKEEFKDFTRYIAYMESQGAHKAGMAKVIPPKDWKPRRTYD
DIDDLVIPAPIQQVVTGQSGLFTQYNIQKKPMTVHEFRKTSNMDKFCNPRYVDFDELERK
FWKNLTFNPPLYGADVSGTLYDPDVTEWNIGRLNTILDTVESESGIKIKGVNTPYLYFGM
WKSAFAWHTEDMDLYSINYLHFGEPKSWYVVPPEHGKRLERLAKGFFPGNAQSCEAFLRH
KMTLISPSILKKYGIPFEKVTQEAGQFIVTFPFGYHAGFNHGFNCAESTNFATQRWIDYG
KQATLCSCRQDMVKISMDVFVRKFQPDRYKLWKAGKDNAPIDHSKPTPEAAEFVKEDKME
PSKSPCEAGSEEPATPVQEDKSPKPQAGTKRQLETVEASEDIKPDLTAETEEVEPKRVKL
SRKESPTKVPVKPDKEKVNPEPKKEKDTKPQTKSQSKASTKKTSNRRSPLKKEKNGVSAP
DTCPPEPVESQVVAPCSEDNDEPQPGNGCSPAHKLFQRTLSPADVLHVHSYAKGDYGEGD
ALLKEEKKSEGSDSEMERDNRHVGKAVAEDMSGDGESESDLGQLPGHHPLIKDGMSDEEA
PQEAPRVEEGGLEGESWAKPLAHLWQNRPPNLKKEREYNQRMGSKPPYCSICMLFQTYQQ
TECGNSVDGPVVVAGGWMRTKPLILEMCFTTTTEEDSECEEQPVTPHLEEDGTSLLISCS
QCSVRVHTSCYGVDPATVSKDWKCARCKANAMTENCCLCSLRGGALQKANNNKWVHVLCA
VAVLEARFVNITERSPVDLSGIPLQRFKLKCYYCKKRMKKASGCCVQCSHGRCPTAYHPT
CAQAAGVLMQPDEWPFVVHVTCCRHKGPTQIERNKAAMHELTVGQKVICKHKNGRYYQCD
VVQLSKETFYEVNFDDGSFSDNLFPEDIVNRDCAQLGPPPQGEVVQVRWTDGLVYGAKFV
AAHAIHMYLVEFEDGSQLTAKRDDVYSLDEELPKRVKSRLSKASDMRFDGIFEEKEIIQE
SKRQRVINSRYRGDYIEPVIYRAIME
NT seq 3141 nt   +upstreamnt  +downstreamnt
atgaccacagacacaccggcccaaagcgtgggctccaggataatgaccttcactccctcc
aaggaggagtttaaggacttcacccgctatattgcctacatggagtcacaaggagcacac
aaagctggaatggcaaaggttattccacctaaagactggaaacctcgacggacgtacgat
gacatcgacgacctggtgattcctgctcccattcagcaagtggtgaccggccagtccgga
ctgttcacccagtacaacatccagaaaaagccgatgaccgtccacgagttccgcaagacc
tccaacatggacaagttttgtaatcctcgatacgtggatttcgacgagctggagaggaag
ttttggaagaacctgaccttcaacccacccctctacggagctgatgtcagcggaacgctg
tacgatccagatgtgactgaatggaacattggccgtctcaacaccattctggacactgtg
gagagcgagagcgggattaagatcaaaggagtcaacacaccgtacctctattttggcatg
tggaagagtgccttcgcctggcacacagaggacatggatctgtacagcatcaactacctg
cacttcggagagcctaaatcctggtatgtcgtcccaccagaacatgggaaaagactggaa
cgtctcgccaagggtttctttccagggaatgctcagagctgtgaagccttcctgcgccac
aagatgactttaatctcgccctcaatcctgaaaaaatacggcataccatttgagaaggtc
acccaggaggccgggcagttcattgtgacattcccgtttggctaccacgccggtttcaac
catggattcaactgtgctgagtccaccaacttcgccacccagcgatggatcgattacgga
aaacaggcaacactgtgttcatgccgtcaggacatggtaaaaatctccatggatgtgttt
gtacgcaagtttcagccagatcgttacaaactgtggaaagcaggaaaagacaacgctccc
atcgaccactccaaacccacgccagaggccgctgagtttgtgaaagaagataagatggag
ccttcaaagagtccctgtgaggctggatctgaagagcccgctactcctgtccaggaggac
aaaagtccaaagcctcaggccgggacaaagcgtcagcttgagactgttgaagcctcagaa
gacatcaaacctgatctgaccgcggagaccgaggaggtggagccaaagagggtcaagctg
tcacgcaaggaatctccaactaaagttcctgtcaagccagataaagaaaaagtcaacccg
gagcctaagaaggagaaagacaccaagcctcagactaaatcccagtccaaagcaagtacc
aagaaaacttcaaacagacgaagccctttaaagaaagagaagaacggcgtgtcggctcca
gacacctgtcctcccgagcccgttgagagccaggtggtggctccgtgctccgaggacaac
gacgagcctcagccgggcaacggctgcagtccggcgcacaaactgtttcagaggacgctg
agccccgcggatgtcctgcacgtccacagctacgccaaaggagactacggagagggagac
gccctgctcaaagaggagaagaagagcgagggtagtgacagcgagatggagagggacaac
agacatgttggcaaagcagttgctgaagatatgtctggagatggagaatcggagagtgat
cttgggcagctgccaggccaccatccactcataaaggatggcatgagtgatgaagaggcc
ccccaggaggccccccgagtagaggagggtggtctggaaggggagagctgggctaaacct
ctggctcacctgtggcagaacagacctcccaacctgaaaaaagagagggagtacaaccag
cgcatgggctccaaacctccatactgctccatctgtatgctgttccaaacataccagcag
accgaatgtgggaacagtgtagacggtcctgtcgtggtggccggcgggtggatgcggacc
aaacctctgatcctagagatgtgtttcaccaccaccacagaggaggactctgagtgtgag
gagcagccggtcacacctcatctagaggaggatggaaccagcctgctcatcagctgctct
cagtgcagcgtccgtgttcacaccagctgttacggcgtggatccagccactgtgagcaag
gactggaaatgtgcgcgctgcaaggccaacgccatgactgagaattgctgtttgtgttcg
ctgaggggcggagccttgcagaaagccaacaacaacaagtgggtacatgtgctgtgtgca
gttgctgtgctggaggcacgctttgtcaacatcactgaaagaagtcctgtcgatttaagt
ggaatccctttgcagagatttaaactgaaatgttactactgtaagaagcggatgaagaag
gcgtctggctgctgcgtgcagtgctctcacggccgatgtcccactgcctaccacccgacc
tgtgcccaagccgccggagtactcatgcagccagatgaatggccgtttgtggtccatgtt
acctgctgtagacacaaaggccccactcagattgagcgcaataaagcagccatgcatgag
ctgactgtgggacagaaggtgatatgcaagcacaagaatggccgctactaccagtgcgac
gtggtgcaactgtctaaagagacgttctacgaggtcaacttcgatgacggctccttcagc
gacaatctcttccccgaagacatcgtgaaccgagactgtgctcagcttggacccccaccc
cagggtgaagtggttcaggtgcgatggacggacggcctggtgtacggagccaaatttgtg
gcagctcatgctattcacatgtacctggtggaattcgaagatgggtcgcagctaacagcc
aagagagatgatgtctactctctggatgaggaactccccaagagagtcaaatccagactg
tcgaaggcgtcggacatgagatttgatgggatctttgaagagaaggagatcatccaggag
tcaaagagacagagagtgatcaactcacgttacaggggggactacatagagcctgtgatt
tacagagccatcatggagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (53)   

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