KEGG   Larimichthys crocea (large yellow croaker): 109136710
Entry
109136710         CDS       T04659                                 
Symbol
lig3
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109136710 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lco03400]
    109136710 (lig3)
Enzymes [BR:lco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109136710 (lig3)
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     109136710 (lig3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme FAD_binding_1
Other DBs
NCBI-GeneID: 109136710
NCBI-ProteinID: XP_019108398
Position
III:complement(39733088..39749464)
AA seq 996 aa
MQRPLVFLAYKTVCVGLQPPGIIVGCQQLPKLCRAFSAVHVLNFPRQIHHFSLVSNTHRL
LQVDPPQLSLHQRFSSPPDMSEQRFIVEYAKRGTAGCKKCKDKIAKGIVRIGKIVPNPFS
ESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEEMQDEDKELINKHVSDLMAKV
NASPKKKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTATKAGSSSSSPGPSSSPAKASQG
STLSAQLCDPQHKDCLLREFRKLCAMVAENNSYNVKTQIIEKFLRKGSGGDKFHGDLYLT
VKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQDDMVRDLEQGDVSETVRMFFEESKSFPA
AAKSLLTIQEVDAFLTRLAQLTKEDEQQTELENIAKKCTGNDLKCIIRLIKHDLKMNSGA
KHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQEASNGSGPRKLLTVEASLMTPVQPMLA
EACKSVEYAMKKCPNGMYSEIKYDGERVQVHKNGDSFSYFSRSLKPVLPHKVAHFKDYIP
QAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIFFNGVSLM
ERPLCERRKFMHDNMVEVPNRILFSEMKHVTRAADLADMITRVIREGLEGLVLKDVRGGY
EPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCTV
TKCSGGYDDATLARLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRNPEEAPVWEITG
AEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLKELFRISKENSDFKVTAGPSD
EKGSSGGDSGGNSPSPSSRGSAPPKKTNSRSTPKPKVVKSEPRSPGPEAPSAKKVKNVHS
NGQSKAKATSQLLEPRNDKTLLDIFSGVKLFLPDSVQDYDKLRRYFVAYDGDLVADYDTA
SATHTLAEPEEDGQAQKVSPSWIWECIRKRRVVPPC
NT seq 2991 nt   +upstreamnt  +downstreamnt
atgcagagaccacttgtttttttagcatacaagactgtctgtgtaggcctacaacctcct
ggaataattgtcgggtgtcagcaactccctaaactgtgtagagccttttcagctgttcat
gtgttaaattttccccgacaaatccatcacttctccttggtatccaatacacacagactc
ctccaagtcgatcctccccagctttctctacatcagcgtttctccagcccgccagacatg
tcagaacaaaggttcatcgttgagtacgccaaacgtggcactgctggatgtaagaaatgc
aaagacaaaatcgcaaagggcatagtacgcataggcaagatcgtgcccaaccctttcagc
gagtctgcaggggagatgaaagagtggtaccatgtgaagtgtatatttgagaagctggaa
agggcgagagccaccacgaagaagattgaggacatcacagatctggagggctgggaggag
atgcaggatgaagacaaggagctcattaataaacatgtttcagacctgatggctaaagtc
aatgcaagtccaaagaagaaggtgcaggccaagttgaacaccaccggccagctaatggcc
cctcctgcggacccatctgtcaatgctccacgcaagttctcaggcttcactgctacaaag
gccggcagctccagctccagcccggggccgtcctcctcacctgccaaagccagccaaggc
agcaccttgtccgctcagctttgtgacccccagcacaaggactgcctcctgcgagagttt
cgcaagctctgcgccatggtggcagaaaacaacagctacaatgtcaagacacagatcatt
gaaaagttcctcaggaagggctccggtggagataagttccatggagatctttatctgacg
gtaaagctgctcctgccaggcgtcgtaaaaagtgtctacaacctcaacgacaagcagatc
gtgaaactcttcagtcgcatattcagatgcaaccaggatgacatggtgcgcgatctggag
cagggcgacgtgtctgagacggtgaggatgttcttcgaggagagtaaatcattcccagcg
gctgccaagagcctcctgaccatccaggaagtggatgccttcctgacccgccttgcccag
ctgacgaaggaggatgagcagcagaccgagctggagaatattgccaaaaagtgcaccggt
aatgacctgaaatgcatcattcgacttattaaacatgacctgaagatgaattccggagca
aaacacgtcttggatgctgtggatccaaatgcgtacgatgccttcaaggcctcgcgtaat
ctgggcgacgtgattgatagggtgttgaggaatcagcaggaggcgtctaatggatcggga
cccaggaaactcctcactgtggaggcctcactcatgacccccgttcagccaatgttggca
gaggcgtgtaaatccgtcgagtacgccatgaagaaatgccccaacgggatgtactctgag
atcaagtacgatggagaacgtgtgcaggtccacaagaatggagacagcttcagctacttc
agccgcagcctcaagccggtgctgccacacaaagttgcccatttcaaggactacattcct
caggcttttcccggaggtcacagtatgatattggatgctgaagtcctcctaattgacaca
aacacaagtaaacccctgccctttgggaccctgggtgtccacaagaaagcagcttttcag
gatgccaacgtgtgcctttttgttttcgactgtatcttcttcaatggcgtgagcctcatg
gagaggcctctgtgtgaacgcaggaagttcatgcatgacaacatggttgaagtccccaac
aggatcctgttctcagagatgaagcacgtcactagggcagcagatctggctgatatgata
actcgtgtcatcagagagggacttgaaggcctggtgcttaaagacgtaaggggcggctac
gaaccgggaaagcgtcactggctgaaggtgaagaaggactacctgaacgaaggggcgatg
gcagacacagctgacctcgtggttcttggggccttttatggaaaaggctcaaacgggggc
atcatgtccagttttctaatgggctgttatgacccagactccaagaaatggtgcacagtc
accaagtgctccggaggctacgatgacgccaccttggccaggctccaaaaagagctggat
gtgatcaaaatcagcaaggagccaagcaaaatcccaggctggttgaaaatcatcaagaac
tattatccagatttcattattcgcaatcctgaggaagcacctgtctgggagatcacaggc
gctgagttttccaaatcagaaatgcacacggctgatggcatctccatccgctttccccgc
atgacacgcatccgtgatgacaaggactggaagactgccaccaacttgcaccagcttaaa
gagctgtttcgcatatcaaaggagaacagcgactttaaagtgacagctggaccttccgac
gagaagggctcgtcaggaggggacagcggagggaactccccgtcgccctcgtcccgtgga
agcgctccacccaagaagaccaacagcagaagcacacccaaaccaaaggtggtgaaatcg
gagcctcgcagtccaggcccagaagcacccagtgccaagaaggtgaaaaatgttcacagc
aacggacaaagcaaagcaaaggcaacctctcaactgctggagccaaggaacgacaagacg
ctgctggacatcttcagtggggtgaagcttttcctgccggactctgtacaggactatgac
aaactgaggcgctactttgtggcgtacgacggagacctcgtagcggactatgacaccgcc
tcagccacacatacgctggctgaacctgaagaggacggccaagcccagaaagtctcaccc
agctggatctgggagtgtatccgcaagaggcgtgtcgtacctccctgttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (39)   

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