KEGG   Lacticaseibacillus paracasei BD-II: LCBD_1119
Entry
LCBD_1119         CDS       T01955                                 
Name
(GenBank) Predicted ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lcs  Lacticaseibacillus paracasei BD-II
Pathway
lcs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LCBD_1119
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcs03019]
    LCBD_1119
   03016 Transfer RNA biogenesis [BR:lcs03016]
    LCBD_1119
Enzymes [BR:lcs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LCBD_1119
Messenger RNA biogenesis [BR:lcs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LCBD_1119
Transfer RNA biogenesis [BR:lcs03016]
 Prokaryotic type
  tRNA degradation factors
   LCBD_1119
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 VQ CSD
Other DBs
NCBI-ProteinID: AEA56617
UniProt: A0A806E335
Position
1081613..1083982
AA seq 789 aa
MTTVGHIRNELLATFRKNPKIDYSVQTLSRALKLNEGADFKTLVQALTGMENDNLIHPIS
EGRYAWGGTPKVLTGIFHGNEKGFGFVAIEDQDNDVYVPSTSTDFALDGDTVEVRIVREA
RPNDTRGPEGEITKVVERSLTTLVGEFKPFSDKDRAKSGFIGMVVSHEKKLKNFPVYVKD
TGTMPQLGDMTVTEITEFPNEHHPKLMYGMVVETLGNKNDPGVDIMSLVMQNHIKTEFPD
EVMTQTNDIPDHVTPEERVNRKDITDQAVVTIDGDDSKDFDDAVVVWKLPNGNFHLGVHI
ADVSHYVTEGSALDKEAFDRGTSTYLVDRVIPMLPFRLSNGICSLNPGVDRLAMSCDMEI
DQDGHVVNHEIYQSIIKSHARMTYDNVNKIVTDHDPEVMAEYQELVPMFEDMVQLHQILY
KMRHARGAIDFEENEAKIIVDDMGHPTDIVLRERGVSERMIESFMLAANETVAEHYNKQH
LPFLYRVHETPDADRIKEFMEFIASFGITVPMKKGKEITPKQLQDVVTDVTGTPEEAMVS
VKMLRSLKQARYSPDPLGHFGLAVKYYCHFTSPIRRYPDLVAHRLIRDYAVEGTGDDIKA
SWNKKLPDIAAQASMAERRSIDAERAVDDLKKAEFMADKVGEEFDAVVSGVTSFGMFVAL
PNTVEGLVHITRMTDDYYSFIDSQMALVGERTKRTYRIGQSLRVKLDNVDIDQRQVDFSL
IPDENTPTSDLGKFVKKEDRRERRPNGNKPGFGNNNHGGPNRNQHNNRPRKPAGAPHQGK
HYNAKRGTK
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaccacagttggccatattcgtaatgaacttttagcaacatttcgtaaaaatccgaag
attgattattcggtccagacgctgagccgtgccttgaaattaaacgaaggcgctgatttt
aaaacgctggttcaagccttaactggtatggaaaatgacaatttaatccatcccattagt
gaaggccgttatgcttggggcggcacgcctaaagtgttgacaggtattttccatggcaat
gaaaaaggttttggtttcgttgcgattgaagatcaggacaatgatgtttatgtgccgtca
acgagcactgattttgctttggacggtgataccgttgaagtccgtatcgtccgtgaagca
cgcccaaacgatacgcgtggaccagaaggcgaaatcactaaggttgttgaacgcagccta
acgacacttgtaggcgaattcaaaccattttccgacaaagatcgggccaagtctggtttt
attggtatggttgtcagccacgagaagaaactgaagaattttccggtttatgtcaaagac
actggtaccatgccgcaattaggcgacatgacggttaccgagattacggaatttcctaat
gaacaccatccgaagctgatgtatggcatggtggttgaaacattgggaaataagaatgat
cccggtgtggatattatgtcattagtgatgcaaaaccatatcaagactgagtttcctgat
gaggtaatgactcaaactaatgatatcccggatcatgtcaccccagaagaacgggtgaac
cgtaaagatatcaccgatcaagccgttgtgacgattgacggcgacgacagtaaagacttc
gatgatgccgttgtcgtttggaaattgccaaacggaaacttccatcttggtgtgcatatt
gcagacgtgtcgcactatgttacagaaggctcagccttggacaaagaagcgtttgatcgc
gggactagtacgtatctggtcgaccgtgtcattccgatgctgccattccggctgtctaat
ggcatttgttcgttgaatcctggcgttgatcgcttggcgatgtcttgtgatatggaaatt
gatcaagatggtcacgtggttaatcacgagatttatcaaagcatcatcaagagccatgcg
cggatgacttatgacaacgtcaacaagattgtgaccgaccatgacccagaagtgatggcc
gagtaccaggaacttgtgccgatgtttgaagacatggttcagctgcatcaaattctttac
aagatgcggcatgctcgaggtgccattgacttcgaagaaaacgaagccaagatcattgtt
gatgatatgggtcacccaacagacattgttctgcgtgagcgtggtgtgtcagaacgaatg
attgaatccttcatgctggccgctaacgaaaccgtcgctgaacattacaacaagcaacat
ttaccattcttataccgggttcacgaaacaccagatgccgaccgcattaaagaattcatg
gaattcattgctagttttggtatcaccgtgccgatgaaaaaaggcaaagaaatcacccca
aagcaacttcaggatgttgtgacagatgtcaccggcacgcctgaagaagcaatggtgagc
gttaaaatgctgcggagtttaaaacaggctcggtattcaccagatccacttggacatttt
ggcttggcagtaaagtattactgccactttaccagtccaattcggcgttatcctgacttg
gtcgctcatcgcttgattcgtgattatgcggttgaaggcactggcgacgatatcaaggca
agctggaataagaaattaccagatattgcagctcaggcatccatggcggaacggcggagc
attgacgctgagcgtgcagttgacgatcttaagaaagctgaatttatggctgataaggtc
ggcgaagaatttgatgctgttgttagcggcgtgacgagctttgggatgtttgtggctttg
ccgaacaccgtagaagggcttgttcatatcacgcggatgaccgatgattattattcattc
atcgatagtcagatggctttagttggcgaacgcaccaagcgcacgtaccgaattggccag
tctttgcgagttaaacttgataatgttgatattgatcagcgacaggtagacttttcattg
attcctgatgaaaatacgccaacaagtgatctgggcaagttcgtcaaaaaagaagaccgg
cgtgaacgtcggccaaatggcaacaagcctggttttggcaataataaccatggtgggcca
aatcgtaatcaacacaacaatcgaccacgcaaaccagctggtgcgccacatcaaggcaag
cactataatgccaagcgcggcactaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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