KEGG   Latilactobacillus curvatus: FBA2_08115
Entry
FBA2_08115        CDS       T04808                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lcv  Latilactobacillus curvatus
Pathway
lcv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lcv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    FBA2_08115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcv03400]
    FBA2_08115
Enzymes [BR:lcv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FBA2_08115
DNA repair and recombination proteins [BR:lcv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      FBA2_08115
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII AAA_22 MFD_D3 RecG_dom3_C IstB_IS21 DUF150_C UB2H
Other DBs
NCBI-ProteinID: ANJ69925
UniProt: A0A1B2A5D6
Position
complement(1602839..1606369)
AA seq 1176 aa
MDLMTMLGQTKQVQSVLKNQRPGIKQLLTGLSGSAKTLFLATIYKQQRQPLLIIESNTFQ
ANQVADDLSNLLNSDQIYTFPVEEVMAAEMAVSSPESRAERVRTLSFLATGKKGIVITSV
AGMRRLLPTARQWQDSQLTINTDSEVDPQALAAQLGEMGYFRDKLVGKPGEFAMRGDIID
IFPLDAENPVRIELFDTEVDSLRSFEADTQRSIENLDSVQIMPATDLLANTAQLEMAGEA
LQAAYEAVAAKITDKTEQKQLATNFETPIERLLAGERVENLALFVDYLYPDQSSLIDYFK
KSGLVIFDDYPRILETQRILTEEAANWQTDMLETHRMLPDQRLMMDAQALIKKDTHAHLY
LSLFQKGMGKLKLDALNNLPTRTVQQFFSQMPLLKTEIAHWQKQKQTVIVLVSDPKRVKK
IDQTFHDFEIDAVIANKTQLETGRTQIIQGSLQNGFELPDLKLVVLTEKELFNTAPKKKV
RRQTLANAERLKSYNELKPGDYVVHVNHGIGEYVGMETLEVDGVHQDYITILYRDNGKLF
IPVTQLNMVQKYVSAEAKTPKINKLGGGEWQKTKSKVSAKIEDIADDLIELYAQREAEKG
FAFPKDDQLQAEFEGQFPYPETDDQLRSTAEIKHDMERVRPMDRLLVGDVGFGKTEVALR
AAFKAVEAGKQVAFLVPTTILAQQHYENMLTRFADFAVEIGLLSRFKTRKEVTATLKGLA
EGKVDIVIGTHRLLSQDIKFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVS
DIERTVDEIQALVPEATVGFAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNV
NTMIVEDADHYGLSQLYQLRGRIGRSSRIAYGYFMYKPDKVLTEVSEKRLQAIKDFTELG
SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLGEAVAKKQGKQVVAKTNAEID
LKLEAYLPDAYINDQRQKIEIYKRIRQMDSEAAFDEIQADLIDRFGDYPDQVANLLAIGQ
LKMNADDALIETIKQTKEIIQVTLSAKGSRLVSGEQIFEALSTTRLKATVGFEQEQLSVK
LVIQPKMQPADWLSEVATFVTSLLKIEQKHTEQPTD
NT seq 3531 nt   +upstreamnt  +downstreamnt
atggatttaatgacaatgctggggcagaccaaacaggtgcaatccgttttaaagaatcaa
cgaccagggattaaacaactacttacagggctttcgggatcagcgaaaaccctgtttttg
gcgacgatttataaacaacagcgacaacccttattgattattgagagtaatacgttccaa
gccaatcaagttgctgatgatttgagtaatttactcaatagtgatcagatttacactttc
ccagttgaagaagtgatggcggctgaaatggcagttagttcacctgagtccagagcggaa
cgtgtgcgaacgttgagttttttagcaacaggcaaaaaaggaattgtgattacatcagtc
gcgggcatgcggcggttattacctacagcgcgtcagtggcaagatagtcaactcacaatc
aataccgatagtgaagttgatccccaggcacttgctgcgcaacttggtgaaatgggttat
ttccgagataagttggttggtaaacctggtgagttcgcaatgcggggggatattattgac
atttttccactggatgcggaaaatccggtccggattgaactctttgatactgaagtggat
tcactgcgttcttttgaagcagatacgcaacggagtattgagaatttagatagtgttcaa
attatgccggcgactgacttattggccaacacagcacaattggaaatggctggtgaagca
ttacaagcagcttatgaggcggttgcggccaaaataacggataaaactgaacaaaaacaa
ttggcgacaaactttgaaacaccgattgaacggttgttggccggtgaacgcgttgagaat
ttggcgttgtttgttgattatctgtatccagatcaatcaagtctgattgattactttaaa
aagagtggcttagtgatttttgatgactatccgcgcattttagaaacgcagcggattttg
actgaagaagcggccaactggcaaaccgatatgttggaaacccaccgcatgttgccagac
caacgactcatgatggatgcccaagcgctcatcaaaaaagatacacatgcgcatctctat
ctatcactgttccaaaagggaatggggaagttaaaactcgatgcactcaacaatttaccc
acgcggacggtgcaacaattctttagccaaatgccgcttttgaaaaccgagattgcgcat
tggcaaaagcaaaaacaaacggtcattgtgctcgtgtctgatcctaaacgggtcaagaag
attgatcagacgttccacgactttgaaattgatgccgtcatcgccaataagactcagttg
gagacggggcggacacaaatcattcaagggtcacttcaaaatggctttgaattaccggat
ttaaaactggtggtcttaactgaaaaggaactgttcaatacggcgccgaagaaaaaagtc
cggcggcaaacattggccaatgcagaacggttaaagagttataacgaattaaaaccaggt
gattacgtggtccacgtcaatcatgggattggcgaatacgtcggcatggaaaccctggaa
gtcgatggggttcatcaagactacatcaccatcttgtatcgggataatgggaagttattt
atcccagtcactcaactcaatatggtgcaaaaatacgtctctgccgaggccaaaacaccg
aagattaataagcttggcggtggcgagtggcaaaagactaagagtaaagtttcggcaaag
attgaagatatcgccgatgatttaatcgaactttatgcgcaacgggaggctgaaaaggga
tttgccttcccaaaagatgatcaattacaggctgaatttgaaggccagttcccctatcct
gaaacagatgatcaattacgcagtaccgctgaaatcaagcatgatatggaacgcgtccgt
ccaatggatcgattattagtcggggacgttggctttgggaaaacggaagtcgctttgcgg
gcggcttttaaggctgttgaagccggtaaacaggtggcctttttagtgccaacaacgatt
ctggcgcaacaacattatgaaaacatgctgacacgcttcgcagattttgcggtcgaaatt
ggtttactgtcacggtttaaaacgcgcaaagaagtgacggcaacgctcaaaggcttagca
gagggcaaagtcgacatcgtgattggcacccaccgcttgttatcgcaagacatcaagttt
aaagatcttggcttgttgattgtcgatgaagagcaacgctttggtgtaaaacacaaagaa
cgacttaagcagttgaaggcacaagttgacgtgttaacgttgacggcaacgccgattcca
cggacgttacacatgtcgatgctcggtgtgcgtgatttatctgtgattgaaacgccaccg
actaaccgctatcctatccaaacgtatgtcatggaacaaaatgccggtgcgatgcgcgaa
gcgattgaacgggaattagaacggaatggtcaagtgttttacctccataatcgagtgagt
gacattgaacgcacggtcgatgagattcaagcactggttcctgaagcaacggttgggttc
gcacatggtcagatgaccgaggcacaactagaaggtgtcatctacgactttgtccaaggt
aaatacgacgtcttggtgacaaccacgattattgaaaccggggttgacatgcctaacgtc
aatacgatgattgttgaagatgctgatcattacggtctttcacagctctatcaattacgc
ggccggattggacgtagtagccggattgcttacggttactttatgtataaacccgataag
gttttaacggaagttagtgagaaacgacttcaggccatcaaggactttaccgaattaggg
tccgggtttaaaattgcgatgcgtgatttatcgattcggggagctggtaatttattaggt
aagcaacaacatggttttatcgattctgttgggtttgacctatactcgcaaatgttgggt
gaagccgtcgctaagaaacaagggaagcaagtcgttgctaaaacaaatgccgaaattgat
cttaaactggaagcttacttaccagacgcgtatattaatgatcaacgccaaaaaattgaa
atttataaacggattcgccagatggattcagaagcggcctttgatgaaattcaggccgat
ttaattgaccggttcggtgattatccagatcaagtcgctaatttattagcgattggtcag
ttgaagatgaatgcagatgacgcgttaatcgaaaccatcaaacaaacgaaagaaatcatt
caagtcaccttatcggcgaagggcagtcgccttgtttcaggtgaacaaatttttgaagcg
ttatcgacaacccgcttgaaagcaacggtcgggtttgaacaagaacaattaagcgtgaaa
ctcgtaatccagccgaagatgcaaccggcagattggttgagtgaagtggcaacttttgtt
acaagtctcttgaagatagaacaaaagcacacggaacaaccaacggattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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