KEGG T04007: ABH19

Leptospirillum sp. Group II: ABH19_09115

Entry

ABH19_09115       CDS       T04007

Name

(GenBank) ribonuclease J

K12574

ribonuclease J [EC:3.1.-.-]

Organism

leg Leptospirillum sp. Group II

Pathway

leg03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:leg00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABH19_09115
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leg03019]
    ABH19_09115
Messenger RNA biogenesis [BR:leg03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ABH19_09115

SSDB

Motif

Pfam:

RNase_J_C RMMBL Lactamase_B Lactamase_B_2

Other DBs

NCBI-ProteinID:

AKS24828

Position

1800993..1802660

AA seq 555 aa
MTKSEPWVRIIPLGGIGEIGMNMTAYETPDGIVVVDCGVLFPEDDLLGIDLIIPDMTFLK
ENRNRLLALFLTHGHEDHIGAIPYFLREFDVPVFGTPLTLGLVEGKVRQHKSLPPPRLVS
IRPREKYTVGPFTFEPIRITHSIADGVAFAITTEAGTILHTGDFKIDLTPIDNEHFDMHR
LCSLGEEGVLCLISDSTNSEKEGLSLSERQVTEPLEQMISQAPGRVIVATFSSNIHRLQQ
VADVSIRNGRKIALTGRSMETNARVAGELGYLSIPPDQIIRLDQVSQYPPERVTILTTGS
QGEPMSALFRMALGDHKHVSIGPGDTILLSARIIPGNERAINKIINLLGKKGAKVFYRRI
SEIHVSGHASQEDQKLMIRMLRPKYFVPMHGEFRQLSQHARTAVRTGIPEENVFVIENGV
VLELTQSRVTQREKVVSGRTFIDGKGIGDVEDMVIRDRQRLGSDGIVTVIVALSQQTGEI
VVGPEVSTRGVVLSDLSLEMNAILKTQVELLLQELGPEVKKEVSALKTLVHNHLRRYFKK
NFERDPVIIPVLLEM

NT seq 1668 nt +upstreamnt +downstreamnt
ctgacgaaatcggaaccctgggtccggatcatccccctcggtggaattggcgaaatcggg
atgaacatgacagcgtacgaaaccccggacggaatcgtcgtggtcgattgcggtgtcctt
tttccggaggacgaccttctcgggattgatctcattattcctgacatgacgtttctcaag
gaaaatcgcaaccggctcctcgccctttttctgacccacggacatgaagaccacatcgga
gcgatcccctactttctccgggagttcgacgtcccggtcttcgggacaccgctgactctc
ggtcttgtcgaagggaaagtccgtcagcacaagagcctgcctcctccccgtctggtttcc
atccgtccccgcgagaaatatacggtcggccccttcacctttgaacccattcgaattacc
cacagcattgcagacggggtggccttcgcgatcacgacggaggcaggaacgatcctccac
accggcgacttcaagattgacctcaccccgatcgataatgagcatttcgacatgcaccgg
ctctgcagcctcggagaagaaggggtcctctgcctgatcagtgattcgaccaactcggaa
aaagagggcctgtccctctcggaacgccaggtgacggaacccctcgaacaaatgatctcc
caggctccaggacgtgtcatcgtggcgactttttcctccaacattcatcgtttgcaacag
gtcgccgacgtctccatccggaacggccggaaaattgcactcacagggcggtcgatggaa
acaaacgcccgcgtggcgggggagctcggatacctctccatccctcctgatcagatcatc
cgcctcgatcaggtgtcccagtatcctccggaaagagtcaccattttaacgaccggaagc
cagggcgaacccatgagtgcccttttccggatggccctgggggaccacaaacatgtttcc
attgggcccggagataccatcctgctgtcggcacgcatcattccgggaaatgaacgcgcc
atcaacaagatcatcaatttgctcggaaagaaaggtgcaaaggttttctaccggcgaatt
tcggaaattcatgtttccggacatgccagccaggaggaccagaaattgatgatccggatg
ctccgtcccaagtattttgtccccatgcacggggagttccggcaactttcgcagcacgcg
agaaccgcagtccggacggggatcccggaagaaaatgtctttgtgatcgaaaacggggtc
gttctcgaattgacccaatcccgggtgacacagcgcgaaaaggttgtgtcggggcgaacg
ttcattgacggcaagggaatcggagatgtcgaagacatggttatccgcgaccgacagcgc
cttggatcggacggaatcgtcacggttattgtcgccctgtcccagcagaccggagaaatc
gttgtcggtcccgaagtctcgacccggggtgttgtcctgtcggatctttcccttgaaatg
aacgccattctgaaaactcaggtggaactcttgctccaggaactggggccggaagtcaag
aaagaggtctctgccctcaagactcttgtccacaatcacctgagacgttacttcaagaaa
aattttgaacgggaccctgtcatcatcccggtccttctcgagatgtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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