KEGG   Lysobacter enzymogenes M497-1: LEN_1346
Entry
LEN_1346          CDS       T04598                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lem  Lysobacter enzymogenes M497-1
Pathway
lem03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LEN_1346 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lem03021]
    LEN_1346 (rpoB)
   03400 DNA repair and recombination proteins [BR:lem03400]
    LEN_1346 (rpoB)
Enzymes [BR:lem01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LEN_1346 (rpoB)
Transcription machinery [BR:lem03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LEN_1346 (rpoB)
DNA repair and recombination proteins [BR:lem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LEN_1346 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 DOCK-C2
Other DBs
NCBI-ProteinID: BAV96833
UniProt: A0A1J1E3J1
Position
1543590..1547753
AA seq 1387 aa
MTTASQNYSFTEKKRIRKDFGKRKSILEVPFLLAIQVDSYREFLQEHTDPAKRADRGLHA
ALKSVFPISSYSGNAALEYVGYKLGDPVFDERECRNRGLSYGAPLRVTVRLVIYDRESST
KAIKYVKEQEVYMGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLL
YSARIIPYRGSWLDFEFDPKDAVFTRIDRRRKLPVTVLLRALGYGNEEMLNKFFEINTFH
IMPEGVQWELVSERLRGETLDFDLADGDRVIVEAGKRVTARHVKQLEQSGISALAVPDSY
LLGRILSHDVVDTKTGEPLATANDEINEDQLQAFRKAGIDQVGTIWVNDLDRGPYISNTL
RIDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSGVGRMKFNRRIGR
KETLGASVLYDAKYFADRKDDESARLRNELGDTSDILDVIRTLTEIRNGRGVVDDIDHLG
NRRVRSVGEMAENTFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSS
QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNI
GLINSLAVFARTNKYGFLETPYRKVVDGKVTEDVEFLSAIEENEYVIAQANAPQDDKGMI
TAQFVACRFQGETLLKPPSEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQVDAGRIVVKVNEEEISAVTDAGV
DIYNLIKYTRSNQNTCINQRPLVKVGDVIARGDVLADGPSTDIGELALGQNMLVAFMPWN
GYNFEDSILLSERVVEEDRYTTIHIEELTCSARDTKLGPEEISADIPNVSEQALNRLDES
GVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTV
IDVQVFTRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLRTQLIGKTANGGA
GLKKGDTVTSLVLDGLKKSDWFTLRMKDEEAIEAIERAQKQIDVHAKEFERRFADKRAKI
TQGDDLAPGILKTVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYAADGQTVDI
VLNPLGVPSRMNIGQILEVHLGWAAKGLGQKIQRMLEAQQKIAELRKFLDDVYNHDSKLH
GQRVDLKQFTDEELLRLARNLTDGVPMATPVFDGAAESEIKRMLELAELPSSGQTVLHDG
RTGEAFERPVTIGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYEMVAGMPESFNVLVKEIRSLAI
NMELEEN
NT seq 4164 nt   +upstreamnt  +downstreamnt
atgaccacagcttcccagaactattcgttcaccgaaaagaagcgcatccgcaaggacttc
ggcaagcgcaagtccatcctcgaagttcccttcctgctcgcgatccaggtcgattcctat
cgcgaattcctgcaagagcacaccgatccggccaagcgcgccgaccgcggcctgcacgcc
gcgctgaagtcggtgttcccgatctccagctacagcggcaacgctgcgctcgagtacgtg
ggctacaagctcggcgacccggtgttcgacgagcgcgaatgccgcaaccgcggcctgtcc
tacggcgctccgctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcctcgacc
aaggcgatcaagtacgtcaaggagcaggaagtctacatgggcgaaattccgctcatgacc
gacaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgc
tcgccgggcgtgttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctg
tacagcgcccgcatcatcccctaccgcggctcctggctggacttcgagttcgacccgaag
gacgcggtgttcacccgtatcgaccgccgccgcaagctgccggtcaccgtgctgctgcgc
gcgctcggttacggcaacgaggagatgctgaacaagttcttcgagatcaacaccttccac
atcatgcccgagggcgtgcagtgggagctggtctccgagcgcctgcgcggcgaaaccctg
gacttcgacctggccgacggcgaccgcgtgatcgtcgaagccggcaagcgcgtgaccgcg
cgccacgtcaagcagctcgagcagtcgggcatctcggccctggccgtgccggacagctac
ctgctgggccgcatcctctcgcacgacgtcgtcgacaccaagaccggcgagccgctggcc
acggccaacgacgagatcaacgaagaccagctgcaggccttccgcaaggccggcatcgac
caggtcggcacgatctgggtcaacgacctcgaccgcggtccgtacatctccaacaccctg
cgcatcgacccgaccaagacccagctcgaggccctggtcgagatctaccgcatgatgcgt
cccggcgagccgccgaccaaggacgccgcgcagaacctgttccacaatctgttcttcacc
ttcgagcgctacgacctgtcgggcgtgggccggatgaagttcaaccgccgcatcggccgc
aaggaaaccctcggcgcctcggtgctgtacgacgcgaagtacttcgccgaccgcaaggac
gacgagtcggcgcgtctgcgcaacgagctgggcgacacctccgacatcctcgacgtcatc
cgcaccctgaccgagatccgcaacggtcgcggcgtggtcgacgacatcgaccacctgggc
aaccgtcgcgtgcgttcggtcggcgaaatggccgagaacaccttccgcgtcggcctggtc
cgcgtcgagcgcgcggtcaaggagcgcctgtcgatggccgagtccgaaggcctgaccccg
caggagctgatcaacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcg
cagctgtcgcagttcatggaccagaacaacccgctgtcggaagtcacgcacaagcgtcgc
gtgtcggccctcggcccgggcggcctgacccgcgaacgcgccggcttcgaagtgcgcgac
gtgcacccgacccactacggccgcgtgtgcaccatcgaaacgccggaaggcccgaacatc
ggcctgatcaactcgctggcggtgttcgcccgcaccaacaagtacggcttcctcgagacg
ccgtaccgcaaggtcgtggacggcaaggtcaccgaggacgtcgagttcctgtcggcgatc
gaagagaacgagtacgtcatcgcccaggccaacgcgccgcaggacgacaagggcatgatc
accgcccagttcgtcgcctgccgcttccagggcgaaaccctgctcaagccgccgagcgag
atccacttcatggacgtctcgccgatgcagaccgtgtcggtcgccgccgcgctggttccg
ttcctggagcacgacgacgccaaccgcgcgctgatgggcgcgaacatgcagcgccaggcg
gttccgaccctgcgttcgcagaagccgctggtcggcaccggcatcgagcgcgccgtggcg
cgcgactcgggcgtgacggtgaacgcgctgcgcggcggcgtgatcgagcaggtcgacgcc
ggccgcatcgtggtcaaggtcaacgaggaggagatctccgcggtgaccgacgcgggcgtc
gacatctacaacctgatcaagtacacccgctcgaaccagaacacctgcatcaaccagcgt
ccgctggtgaaggtgggcgacgtgatcgcgcgcggcgacgtgctggccgacggtccctcg
accgacatcggcgagctcgcgctcggccagaacatgctggtcgcgttcatgccgtggaac
ggctacaacttcgaagactcgatcctgctctccgagcgcgtggtcgaagaggatcgctac
accacgatccacatcgaagagctgacctgctcggcgcgcgacaccaagctgggtccggaa
gagatctccgccgacatcccgaacgtctccgagcaggcgctcaaccgcctcgacgagtcg
ggcgtggtgtacatcggcgccgaggtccgcgccggcgacatcctggtcggcaaggtcacc
ccgaagggcgaatcgcagctgactccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcttccgacgttaaggacagctcgctgcgcgtgcccccgggcatggacggcaccgtc
atcgacgtgcaggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatc
gaagagtcggaaatccgccgggtcaagaaggacttcgacgaccagttccggatcctcgaa
gcggcgatctacgaccgtctgcgcacgcagctgatcggcaagaccgccaacggcggcgcc
ggcctgaagaagggcgacaccgtcacctcgctggtgctggacggcctgaagaagtccgac
tggttcaccctgcgcatgaaggacgaggaagcgatcgaggcgatcgagcgcgcgcagaag
cagatcgacgtgcacgcgaaggaattcgagcgtcgtttcgccgacaagcgcgccaagatc
acccagggcgacgacctggctccgggcatcctcaagacggtcaaggtgttcctggcggtc
aagcgccgcatccagccgggcgacaagatggccggccgtcacggcaacaagggcgtggtc
tcgaccatcgttccggtcgaggacatgccgtacgccgccgacggtcagaccgtcgacatc
gtgctgaacccgctgggcgtgccgtcgcgtatgaacatcggccagatcctcgaggtgcat
ctgggctgggccgccaagggcctgggccagaagatccagcgcatgctggaggcgcagcag
aagatcgccgagctgcgcaagttcctcgacgacgtctacaaccacgacagcaagctgcac
ggccagcgcgtcgacctcaagcagttcaccgatgaggaactgctgcgtctggcgcgcaac
ctgaccgacggcgtgccgatggcgactccggtgttcgacggcgcggccgagtccgagatc
aagcgcatgctcgaactcgccgaactgcccagcagcggccagaccgtgctgcacgacggc
cgcaccggcgaagcgttcgagcgtccggtgaccatcggctacatgcacatgctgaagctg
aaccacctggtcgacgacaagatgcacgcgcgctcgaccggtccgtactcgctcgtcacc
cagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggcgaaatggaagtc
tgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtcc
gacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgacggcgagtacgagatg
gtcgccggcatgccggagtccttcaacgtgctggtcaaggaaatccgctcgctcgcgatc
aacatggagctggaagagaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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