KEGG   Leptolyngbya sp. NIES-3755: LEP3755_08000
Entry
LEP3755_08000     CDS       T04199                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
len  Leptolyngbya sp. NIES-3755
Pathway
len03030  DNA replication
len03410  Base excision repair
len03420  Nucleotide excision repair
len03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:len00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LEP3755_08000
   03410 Base excision repair
    LEP3755_08000
   03420 Nucleotide excision repair
    LEP3755_08000
   03430 Mismatch repair
    LEP3755_08000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:len03032]
    LEP3755_08000
   03400 DNA repair and recombination proteins [BR:len03400]
    LEP3755_08000
Enzymes [BR:len01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LEP3755_08000
DNA replication proteins [BR:len03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LEP3755_08000
DNA repair and recombination proteins [BR:len03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LEP3755_08000
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LEP3755_08000
   MMR (mismatch excision repair)
    DNA ligase
     LEP3755_08000
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LEP3755_08000
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: BAU10316
UniProt: A0A0S3TYM0
Position
complement(863508..865541)
AA seq 677 aa
MDSVAQLTPEIQQRVQELKNLLQKASYEYYVLDAPTMDDAVYDRLYRELQTLESQYPELI
APDSPTQRVGERPASQFTSIKHNVPLYSLENAFGNEDLATWEQRWKKAAPDVTEYDYICE
LKIDGNALALTYENGVLVRGATRGDGITGEEITQNVKAIRSIPLRLNLENPPAIVEVRGE
AFLSLDTFEQINRDREKSGESLFANPRNATAGTLRQLDSKIVAQRQLDFFAYTLHFPGEL
KTQWEALELLKQMGFRVNPERQQCANLQEVQEYCDRWSIDRTQLRYMTDGVVIKINSLAL
QERIGFTQKFPRWAIALKYPAEEAPTILENISVNVGRTGAITPVAELKPVQLAGTTVSRA
TLHNRDRIAELDCRIGDTVIIRKAGEIIPEVLRVLKELRPTDAQPYEMPSHCPECGEAVV
KPEDEAVTRCINASCPAILRGALTHWASRDALDINGVGEKLVAQLVDSNLVQSVGDLYEL
SIEQLLTLDRMGKKSAEKIVSAIQHSKAQPWSRVLFGLGIRHIGSVNAQTLTQTFQKVEL
LAQATPEQIEAVPGFGSEIAQSVYEWFQNHGNQELIDRLRQAGVQLEGEAAPVAQVETAI
TGKTFVITGTLPTLKRDEAQALIQQAGGKVSDSVSKKTDYLVAGEKAGSKLDKAQSLGIS
VLSEADLLALIQGESLS
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggattcagtcgcgcaactcacgccggagattcaacagcgagtacaagaactcaaaaac
ctgttgcaaaaagcgagttacgaatattacgtgttagatgcaccgacaatggacgatgcc
gtttacgatcgcttatatcgcgaactgcaaacgctcgaatctcaatatccagaactgatc
gcacccgatagtccaactcagcgcgtgggtgagcgtcctgcgagtcaattcacttcgatc
aagcacaatgttccgctctatagtctagagaatgcgttcggcaacgaggacttagcgacc
tgggaacagcgatggaaaaaagcggctcccgatgtcaccgagtacgattacatctgcgaa
ttaaagattgacgggaatgcgttggctttaacttatgaaaatggcgttctcgtgcggggt
gcaactcgtggcgacggtatcacaggcgaagaaattacccaaaacgtaaaagccattcga
tcgattcctttgcgtctcaatctagaaaatcctccagcaatcgtcgaagttcggggcgaa
gcgtttctttccctcgatacatttgagcagatcaaccgcgatcgagaaaaatccggcgaa
tctctttttgccaatccccgaaatgcaactgctggaacattacgccaactcgattctaaa
attgttgctcaacgccaactcgatttctttgcttatacattgcattttccaggtgaactt
aaaacccagtgggaagcattggaactattgaaacaaatgggttttcgagtgaatccagaa
cgtcaacagtgtgcgaatcttcaggaagttcaggaatactgcgatcgctggtctatcgat
cgtactcaattgcgctatatgactgatggcgtagtgattaaaattaattctctcgcactt
caagaaagaatcggatttacgcaaaaatttccccgttgggcgatcgcgctcaagtatcct
gccgaagaagctcccaccattctcgaaaacattagtgtgaatgtgggacgaacgggagca
attaccccagttgccgaattaaaacctgtgcaattagcaggtacgaccgtttctcgtgcg
accttgcataaccgcgatcgtattgctgaacttgattgcagaattggcgacaccgtgatt
attcgcaaagctggcgaaatcattcccgaagtgttgcgggttctgaaagagttacgaccg
acagatgcacaaccgtatgaaatgccttctcattgtccagagtgtggcgaagctgtggtt
aaacctgaagacgaagctgtgactcgctgtattaacgcttcgtgtccagcaattttgcgt
ggagcattaacccattgggcgagtcgggatgcgttagatattaacggagtcggtgaaaaa
ctcgttgcacaattggtggatagtaatttggtgcagtcggttggagatctctatgaatta
tcgatcgaacaactcttaacgctcgatcgcatgggcaaaaaatccgctgaaaagattgtg
tcagcgattcagcactcgaaagctcaaccttggtcgcgagtcttgtttggtttaggaatt
cgacatatcggcagcgtgaatgctcaaactctgacgcaaacctttcagaaagtagagtta
ctcgctcaggcaacacccgaacaaatcgaagccgttccaggatttggctctgagattgca
caatctgtgtatgagtggtttcagaatcatgggaaccaggaactcatcgatcgattacgt
caagcgggtgtccaacttgaaggtgaagccgctccagtcgcacaagttgaaacggcgatt
acaggtaaaacgtttgtgattactggaaccttgccaactttgaaacgcgacgaagctcaa
gcattaattcaacaagcaggcggcaaagtgtccgattctgtcagcaaaaagaccgattac
ttagtcgcaggagagaaggcaggatcaaagcttgataaggcacaatctctcggaatttct
gtgctttcggaggcggatctgctggcattgattcaaggcgaatcgctatcatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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