KEGG   Leptotrichia sp. oral taxon 498: BCB68_10060
Entry
BCB68_10060       CDS       T04995                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
leq  Leptotrichia sp. oral taxon 498
Pathway
leq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:leq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BCB68_10060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leq03019]
    BCB68_10060
   03009 Ribosome biogenesis [BR:leq03009]
    BCB68_10060
Enzymes [BR:leq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BCB68_10060
Messenger RNA biogenesis [BR:leq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BCB68_10060
Ribosome biogenesis [BR:leq03009]
 Prokaryotic type
  rRNA helicases
   BCB68_10060
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 Helicase_RecD Flavi_DEAD
Other DBs
NCBI-ProteinID: ASQ49231
UniProt: A0A222PBL5
Position
complement(2074260..2075945)
AA seq 561 aa
MQKFEDFGLSTEMLNALSKKGFEEPSEIQKLVLPELLKERTHLIGQAQTGTGKTAAFGIP
ILETIKSDKTVKALILAPTRELANQVADEIYSLKGEKDLKVLAVYGGASIENQIRRLKSG
VDIVVGTPGRVIDLMNKKVLKVNNLDYFVLDEADEMLNMGFVEDIEEILKKTNDEKKMLF
FSATIPKPILAIAKKFMPEYKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQD
FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKVLTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGIAITFVTPREASKLAQIKRITK
TDIKREDIPNVEEILNAKKEALIAYVEEIIKEDDHSAYDELANNLLQGRDPKQVLASVLR
HVYEDEFLPENYSEIQDVKVKIADKTRLFIALGSKDGYNVGRLLDLLHKKAKTPGRKVKD
VKIMDKYSFITVPLQEAEYIMRALNSKKDSKPLVEEATGGRKSGGNEKKSSKKSGRKKSS
SKKSSSKKDKKDKKSKKKSKK
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgcaaaaatttgaagattttggattaagtacagaaatgcttaatgcactaagtaaaaaa
ggattcgaggagccaagtgaaatacagaaattggtacttcccgaattattaaaggaaaga
acgcacttaataggacaagcacagacagggacaggaaaaacagcggcatttggcattcca
atcctagaaactattaaatctgataaaactgttaaagcgttaattttggcacctacaaga
gaacttgcaaatcaagtggcagatgaaatttattcgttaaaaggtgaaaaggatttaaaa
gtattggcagtttatggtggcgcatctatcgaaaatcaaattagaaggttaaagtcagga
gttgacattgttgttggaacacctggaagagttatagacttgatgaataaaaaagtctta
aaagttaataatttagattatttcgtattagacgaagcagatgaaatgttaaatatggga
tttgttgaagatattgaagaaatacttaaaaagacaaacgacgagaaaaaaatgttattt
ttctcagcaacgattcctaaaccaattttggcgatagctaaaaaatttatgccagaatat
aaattattaaaagttgcaaaaaaagaattgactacaaatttgacggaacaaatttattat
gaagttaagcaagaggataaatttgaagcgctatgcagagttttggactatgaacaggat
ttttatggaattgtgttttgtagaacaaaatcggaagttgacgatgttacaaataaactg
aaagctagaaattatgatgctgaatgcattcacggggacatcactcaagcattaagacaa
aaagcgctagatttattcaagaaaaaagtgttgacgattcttgtggcgacagatgttgcg
gcaaggggaatagatgtaagcaatttaacacatgtaattaattattcaattccacaagaa
gctgaatcttacgttcacagaattggaagaactggaagagctggacaaaaagggattgca
attacatttgttacacctagggaagctagtaaattagctcagataaaaagaattacaaaa
actgacatcaaaagagaagacataccaaatgtggaagaaattttaaatgctaaaaaagaa
gcattaatcgcttatgttgaagaaattataaaagaagacgaccacagcgcttacgatgaa
ttggcaaataatttactccaaggaagagatccaaaacaagtgttggcatctgtgttaaga
catgtctatgaagatgagtttctacctgaaaattacagtgaaattcaagatgtgaaagtt
aaaattgcggataaaacaagattatttatcgcacttggctcaaaagatggttataatgtg
ggaaggctattagatttacttcataaaaaggcaaaaactccaggaagaaaagtaaaagat
gtaaaaattatggataaatattcgtttataacagtgccattgcaagaagcggaatatatt
atgagagcactaaattctaaaaaagattctaaacctttggttgaagaagctacaggcgga
agaaaaagcggagggaatgagaaaaaatcttctaaaaaatctggaagaaaaaaatcatca
agtaaaaaaagttcttcaaaaaaagacaaaaaagataaaaaatctaagaaaaagtctaaa
aaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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