KEGG   Leptospirillum ferrooxidans: LFE_0909
Entry
LFE_0909          CDS       T01809                                 
Name
(GenBank) putative DNA directed RNA polymerase, alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
lfc  Leptospirillum ferrooxidans
Pathway
lfc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lfc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LFE_0909
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lfc03021]
    LFE_0909
   03400 DNA repair and recombination proteins [BR:lfc03400]
    LFE_0909
Enzymes [BR:lfc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LFE_0909
Transcription machinery [BR:lfc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LFE_0909
DNA repair and recombination proteins [BR:lfc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LFE_0909
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD Htt_bridge Peptidase_M27 CRISPR_assoc
Other DBs
NCBI-ProteinID: BAM06613
UniProt: I0IMW4
Position
884942..885919
AA seq 325 aa
MNMFSDFQMPKSVVIDNETQTDRFLKVVVEPFERGYGTTLGNSLRRVLLSSIPGAAITAI
RHRGIFHEFSNIPGVLEDVSDIVLNLKEVRVKSHHTDPIWVHLKASGPGRVTAGQIETQG
VIEILDPDHLIATLDKGATLDLDLQVSIGRGYVPADRSKEDSLEVGVIPIDAIYTPIKKV
NFYVDSTRVGRMTDYDRLTMEVETDGSLTPEEAIAQASSLLKEHLSLFSFEETNASASNS
AAHALKIDQVSSDLLAKPVSELDLSLRALSCLKNAHISTVGELIQKSEHELLDTKIFGRK
SISEVRDALGAIGLSLGLDLESTQA
NT seq 978 nt   +upstreamnt  +downstreamnt
atgaatatgttttctgattttcagatgcctaaatctgtcgtgattgataatgaaacacag
acagaccgatttctgaaagtagttgttgaaccatttgaaagaggttatggaacgaccttg
ggaaattctctaaggagagttttattatcttcgatccctggagcagctattactgcaatt
aggcatcgaggtatctttcatgagttctcaaacattccgggtgttcttgaagatgtttca
gatattgttttgaaccttaaggaggttcgagtcaaatctcaccatactgaccctatatgg
gtccatttgaaagcgtctggtccaggtagggtaaccgctggccaaatcgagacacaagga
gttattgaaattcttgatccagaccatctaattgctacacttgataagggtgcaactctc
gatttagatctacaggtttcaattggacgtggttatgttccagcggacagatctaaagag
gactctttagaagtcggagttatacccatagacgcaatctatactccaataaaaaaagtt
aatttttatgtagatagtacaagagtcggaagaatgacagattatgatcgtcttactatg
gaagtagaaacagatggcagtttaactcccgaagaagcaattgctcaggcttcttctcta
ttaaaagaacacttgagtttgttctccttcgaagagactaacgcctccgcttctaacagc
gcagctcatgctcttaaaatagatcaagtttcctctgatcttcttgcaaaacctgtgtcc
gaactcgatttatcgcttcgtgcgttaagttgtttgaagaatgctcatatctcaactgtt
ggggagcttattcaaaagtctgaacatgagcttcttgatacaaaaatctttggaagaaaa
tctatttcagaagttcgagacgctcttggcgcgatagggctctctctcggtttggatctg
gaaagtactcaggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system