KEGG   Lactobacillus fermentum IFO 3956: LAF_1316Help
Entry
LAF_1316          CDS       T00699                                 

Definition
formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lfe  Lactobacillus fermentum IFO 3956
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:lfe00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    LAF_1316
Enzymes [BR:lfe01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     LAF_1316
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     LAF_1316
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(1494916..1495755)
Genome map
AA seq 279 aa AA seqDB search
MPEMPEVETVRRGLMRIAAGRQIKGIDVNYGKTIENDVEEFRQALIGQTIERIDRRGKYL
LFRFSNDLTMVSHLRMEGSYFNQPTGAEVDKHTHVIFHFTDGTDLCYRDTRKFGRMHLVK
TGEEMTVGGLKTIGPEPTEEDFQFDYFKQILKKSRSKIKPFLLDQSHVAGLGNIYADEVL
WQTQINPEQPANSLTDDQIKRLRENIIAEIARATAGHGTTVHTFKNAFGDAGQFQNELQA
YGHSGDACPRCGTKLVKIKVAQRGTTFCPHCQALVEPDD
NT seq 840 nt NT seq  +upstreamnt  +downstreamnt
atgccagaaatgccagaagttgaaaccgtgcggcgggggttaatgcgaatcgcggccggc
cgtcagatcaaggggattgacgtcaattacgggaagacgattgaaaatgacgttgaggag
tttcgccaggccttgatcggccaaaccatcgaacgaatcgaccgccgggggaagtacttg
ctcttccgcttttccaacgacctgacgatggtctcccacctacggatggaggggagttac
tttaaccaaccgaccggcgccgaagttgataagcacacccacgtgatttttcacttcacc
gacggcaccgacctgtgctaccgcgacacccgtaagtttgggcggatgcacctggttaaa
accggggaagaaatgacggtcggcgggctgaaaacgatcggcccggaaccaactgaagag
gactttcagtttgattacttcaagcagatcctcaagaagagccggagcaagattaagccc
ttcttgttggatcagtcccacgtggccgggttaggtaacatctacgctgacgaagtcctt
tggcaaacccaaattaaccccgagcaaccggctaattcgctgactgacgatcaaattaag
cgcctgcgcgaaaacatcatcgcagaaatcgcccgggccacggcgggccacgggacgacc
gtccacacctttaaaaacgccttcggggacgctggtcaattccaaaatgaactccaggct
tacgggcacagcggtgacgcttgcccgcgctgcggcaccaagctagtcaaaattaaggtg
gcccagcgggggacgactttttgtccgcactgccaagcgctggtggaaccagatgactaa

DBGET integrated database retrieval system