KEGG   Lactobacillus fermentum CECT 5716: LC40_0840Help
Entry
LC40_0840         CDS       T01958                                 

Definition
DNA glycosylase (EC:4.2.99.18)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lfr  Lactobacillus fermentum CECT 5716
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:lfr00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    LC40_0840
Enzymes [BR:lfr01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     LC40_0840
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     LC40_0840
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(1496007..1496846)
Genome map
AA seq 279 aa AA seqDB search
MPEMPEVETVRRGLMRIAAGRQIKGIDVNYGKTIENDVEEFRQALIGQTIERIDRRGKYL
LFRFSNDLTMVSHLRMEGSYFNQPTGAEVDKHTHVIFHFTDGTDLCYRDTRKFGRMHLVK
TGEEMTVGGLKTIGPEPTEEDFQFDYFKQILKKSRSKIKPFLLDQSHVAGLGNIYADEVL
WQTQINPEQPANSLTDDQIKRLRENIIAEIARATAGHGTTVHTFKNAFGDAGQFQNELQA
YGHSGDACPRCGTKLVKIKVAQRGTTFCPHCQALVEPDD
NT seq 840 nt NT seq  +upstreamnt  +downstreamnt
atgccagaaatgccagaagttgaaaccgtgcggcgggggttaatgcgaatcgcggccggc
cgtcagatcaaggggattgacgtcaattacgggaagacgattgaaaatgacgtcgaggag
tttcgccaggccttgatcggccaaaccatcgaacgaatcgaccgccgggggaagtacttg
ctcttccgcttttccaacgacctgacgatggtctcccacctacggatggaggggagttac
tttaaccaaccgaccggcgccgaagttgataagcacacccacgtgatttttcacttcacc
gacggcaccgacctgtgctaccgcgacacccgtaagtttgggcggatgcacctggttaaa
accggggaagaaatgacggtcggcgggctgaaaacgatcggcccggaaccaactgaagag
gactttcagtttgattacttcaagcagatcctcaagaagagccggagcaagattaagccc
ttcttgttggatcagtcccacgtggccgggttaggaaacatctacgctgacgaagtcctt
tggcaaacccaaattaaccccgagcaaccggctaattcgctgactgacgatcaaattaag
cgcctgcgcgaaaacatcatcgcagaaatcgcccgggccacggcgggccacgggacgacc
gtccacacctttaaaaacgccttcggggacgctggtcaattccaaaatgaactccaggct
tacgggcacagcggtgacgcttgcccgcgctgcggcaccaagctagtcaaaattaaggtg
gcccagcgggggacgactttttgtccgcactgccaagcgctggtggaaccagatgactaa

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