KEGG T01958: LC40

Limosilactobacillus fermentum CECT 5716: LC40_0955

Entry

LC40_0955         CDS       T01958

Name

(GenBank) DNA-directed RNA polymerase alpha subunit

K03040

DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]

Organism

lfr Limosilactobacillus fermentum CECT 5716

Pathway

lfr03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:lfr00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LC40_0955
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lfr03021]
    LC40_0955
   03400 DNA repair and recombination proteins [BR:lfr03400]
    LC40_0955
Enzymes [BR:lfr01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LC40_0955
Transcription machinery [BR:lfr03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LC40_0955
DNA repair and recombination proteins [BR:lfr03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LC40_0955

SSDB

Motif

Pfam:

RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD SpoIVA_ATPase DUF2325 Mg_chelatase_C CTD12

Other DBs

NCBI-ProteinID:

ADJ41526

Position

complement(1695376..1696320)

AA seq 314 aa
MIEFEKPNIHKVEETDNYGKFVVEPLERGYGTTLGNSLRRVMLASLPGAAITSIQIDGVL
HEFSTVQGVTEDVTQIILNLKQVALKIDSEDAKDLEIDVKGPAEVTAADIQGDGDVTILN
SDLHIATVSDGAELHVKMTADKGRGYSSADDNKTRMEGLAIGVLPIDSIYTPIERVNYTV
ENTRVGQSNDYDKLTLDVWTNGSLTPTEAISLAAKILTEHLTMFVNLTEEAQVTQVMVER
EETHQEKVLDKTIEELDLSVRSYNCLKRADIQTVKDLTERTEADMMKVRNLGTKSLDEIK
LKLAELGVGFRQED

NT seq 945 nt +upstreamnt +downstreamnt
atgatcgaatttgaaaaaccaaacatccacaaagttgaagaaacagacaactacggtaag
tttgtcgtagaaccgttggaacgcggttacgggacgactctgggtaactctcttcggcgt
gttatgctggcatccctgccaggggcagccatcaccagcattcaaattgatggtgttctg
catgaattcagcacggttcaaggggttacggaagacgttacgcagattatcttgaactta
aagcaagttgctttaaagattgattctgaggacgctaaggaccttgaaattgacgttaag
ggtccggccgaagtaacggctgccgacatccaaggtgacggcgatgttactatcctgaac
tctgaccttcacattgcgacggtttccgacggtgccgaattgcacgttaagatgaccgct
gataagggtcgtggttactcatctgctgatgataacaagactcgtatggagggcttggca
attggtgtcttaccaattgattccatctacaccccgatcgaacgtgttaactacacggtg
gaaaacacccgggtggggcaaagcaacgactacgataagctgacccttgacgtttggact
aatggttccttaacgccaaccgaagcaatcagtcttgctgctaagatcctcactgaacac
ctgacgatgttcgtcaacctcaccgaagaagcacaagtaactcaagtgatggttgaacgg
gaagaaacccaccaagaaaaggtgcttgacaagaccatcgaagaacttgacctgtctgta
cgttcatacaactgtttgaagcgtgctgacatccaaaccgtaaaggacttaactgaacgg
accgaagccgacatgatgaaggttcggaaccttgggacgaagtcattggatgaaatcaag
ctcaagttggctgaacttggcgttggttttcgccaagaagattaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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