KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_186799
Entry
LOTGIDRAFT_186799 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03018  RNA degradation
lgi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LOTGIDRAFT_186799
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOTGIDRAFT_186799
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_186799
   03041 Spliceosome [BR:lgi03041]
    LOTGIDRAFT_186799
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     LOTGIDRAFT_186799
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     LOTGIDRAFT_186799
Spliceosome [BR:lgi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    LOTGIDRAFT_186799
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 20244718
NCBI-ProteinID: XP_009049908
JGI: 186799
UniProt: V4CC27
Position
Unknown
AA seq 96 aa
MASSIESYINKMVSVVTSDGRIIVGTLKGFDQTINLILDESHERVYSGGQGVEQVILGLY
IIRGDNIAVIGEIDDDTDQGLDFQNIKAEPLNSVVH
NT seq 291 nt   +upstreamnt  +downstreamnt
atggcttcttcaattgaaagctatataaacaaaatggtttcagttgtaacttcagatgga
agaattattgtgggaacattaaagggttttgatcagaccattaatttgatattagatgaa
agtcatgaaagagtttatagtggtggtcaaggtgtagaacaagttattttaggtttatat
ataatcagaggagataacatagctgttattggtgaaatagatgatgatacagatcaggga
ctggactttcaaaatatcaaagctgaaccattaaattccgttgttcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (40)   

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