KEGG T04115: AO203

Lactobacillus gallinarum: AO203_09910

Entry

AO203_09910       CDS       T04115

Name

(GenBank) single-stranded-DNA-specific exonuclease RecJ

K07462

single-stranded-DNA-specific exonuclease [EC:3.1.-.-]

Organism

lgl Lactobacillus gallinarum

Pathway

lgl03410

Base excision repair

lgl03430

Mismatch repair

lgl03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:lgl00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AO203_09910
   03430 Mismatch repair
    AO203_09910
   03440 Homologous recombination
    AO203_09910
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgl03400]
    AO203_09910
DNA repair and recombination proteins [BR:lgl03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     AO203_09910
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     AO203_09910
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AO203_09910

SSDB

Motif

Pfam:

DHH ssDNA-exonuc_C DHHA1 RecJ_OB

Other DBs

NCBI-ProteinID:

ALJ24052

Position

complement(1951125..1953398)

AA seq 757 aa
MKWQQRTAEELAPDLVEKYQLSPISARLFTLRGINTDEKLAFWFNATEENLADPALMHDM
DKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYGPN
LDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVHCN
YPGQEYPFDDYCGAGVAYTICRKLMQDPVSELLDLAMIGTIGDMVKVTGEGHIIVKRGLD
VLNQTERPGLRALIKNAGLTVETINETDVGFNIAPRLNAVGRLANANLAVELLLSDDDLE
AQKIADQIEDLNNKRKELTTEVYDRCMELVRENSWQKQNTLVLYDPDFHEGVLGLVANKI
VEKLHKPTIVLTKNDEGEIKGSGRSFSGFNLFDALNPLKESLLTKFGGHDFACGLSMEED
KVNDLREKFEADFHVDGGLETKEYDMELPMHDLSPQTLAQINQVGPFGTGDPQPIFSISD
PTITHFFKIGKDKNHVKLTANKKDGNLAIVGFNKYYLNNNLLPFISKIFVTLSLNTYRKQ
VSLQGIMEEIAFASPKLAVPTSVIDLRQEKFVMGFADRYLLFDKKNIPIVKNRLQIDDDK
ISLVKDYDQSGETVALLDVPRNQVELNAALEKDYQQIYLRFLLDQLPVEQIPAKSCFGKV
LKYIYAHPALKPEDYRTVAPYLGLDYDSVLFILRVFFELGFVKLDDQKLVGESNPKKQPL
TASKYLMATSSQIKFINQLRTMPTQKLVTYVNNLVRR

NT seq 2274 nt +upstreamnt +downstreamnt
atgaagtggcaacaaagaacagctgaagaattagcgccagatttagtagaaaagtatcaa
cttagccctatttcagcacggctttttacattacgtggtattaatactgatgaaaaattg
gctttttggtttaatgcgaccgaagaaaacttagctgatcctgctttgatgcatgatatg
gacaaagctgttgatcggattaatcaagcgatcgataatggtgaaaaaattactatttat
ggtgattatgatgctgatgggattactgctactacaattatgactgaagccttaagcatt
ttgggtgcggatgttcattactttataccagatcgctttaaagatggatatggccctaat
cttgatcgctacaaggatatagtagctgatggcacaaagttaattattaccgtagataat
ggtgtaacggggattgaagaagttgaatacgctaaagaacatggcgttgatactattatt
acggatcaccatacttttcaagaaaataagccagatgcttatgcaattgttcactgtaat
tatcctggtcaagaatatccttttgatgattattgtggtgcaggtgtagcttatacgatt
tgtcgtaagcttatgcaggatcctgtatcagaattgctagatttagcaatgatcggtact
attggtgacatggttaaagttactggtgaaggccatattattgtaaaacgtgggttagat
gttcttaatcaaaccgaacgaccgggcttaagagcgcttatcaaaaatgccggtttaacg
gtagaaacgattaatgagacagatgtaggctttaatattgctcctagacttaatgctgtt
ggacgtttggctaatgctaatctggcagtagagcttttgcttagtgatgatgatcttgag
gcacagaagatcgcagatcagattgaagacttaaataataagcgtaaagagctaactact
gaggtttacgatcgctgcatggaattagttcgtgaaaatagttggcaaaagcaaaatact
ttagttttatatgatcctgattttcatgaaggagttttggggcttgttgctaacaagata
gtggaaaaactgcataaaccaacaattgttttaactaaaaacgatgaaggggagattaag
ggatcaggtcgttcattcagtggttttaacttatttgatgctcttaatccgttaaaagaa
agtctattgaccaaatttggaggtcatgattttgcttgtggtttatccatggaagaagat
aaagtaaatgacctacgggaaaagtttgaagccgattttcatgttgacggtggtttagag
actaaagagtacgatatggaattgcctatgcatgacttatcacctcaaactttggctcaa
attaatcaagtgggaccatttggtactggtgatccgcagccaatttttagtatttcggat
ccaactattacacactttttcaaaataggaaaagataagaatcatgttaaattaacagct
aataaaaaagacggcaatttagcaattgtgggatttaataagtattatttgaataataac
ttgttaccatttatttcaaaaatctttgttactctctctttgaatacttatcgcaaacaa
gtatctttgcaaggcatcatggaggaaatagcttttgcatccccaaaattagctgtacca
acatcagtaattgatttaagacaagagaaatttgtcatgggctttgcagatcgttatttg
ctttttgacaaaaagaatattccaattgttaagaatcgccttcaaattgatgatgataaa
attagcttggttaaagattatgatcaatcgggtgaaacagtagctttgcttgatgtgcct
cgcaatcaagtggaattaaatgcagcgttagaaaaagattatcaacaaatttatttacgc
tttttattagatcagttacctgttgaacaaattccagcaaagagttgtttcggaaaagtg
ttaaagtatatttatgcccatccagcattaaagcctgaagactatcgcactgtagcacca
tatctaggtttggattatgatagtgtattgtttattttgcgagtattctttgaattaggt
tttgttaaattagacgatcaaaaattagttggtgagtctaatccaaagaagcaaccattg
acagcttctaaatatttaatggcaacgagttcacaaattaaatttattaatcaactaaga
acgatgcctactcaaaaattagttacatatgttaataatttggtaagaagatag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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