KEGG T04163: LG3211

Lysobacter gummosus: LG3211_5009

Entry

LG3211_5009       CDS       T04163

Symbol

rhlB

Name

(GenBank) ATP dependent RNA helicase RhlB

K03732

ATP-dependent RNA helicase RhlB [EC:3.6.4.13]

Organism

lgu Lysobacter gummosus

Pathway

lgu03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:lgu00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LG3211_5009 (rhlB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgu03019]
    LG3211_5009 (rhlB)
Messenger RNA biogenesis [BR:lgu03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LG3211_5009 (rhlB)

SSDB

Motif

Pfam:

DEAD Helicase_C RhlB ResIII

Other DBs

NCBI-ProteinID:

ALN93942

Position

complement(5647119..5648930)

AA seq 603 aa
MSDKPLTDITFSSFDLHPSLLAGLEAAGFSRCTPIQALTLPIALTGRDVAGQAQTGTGKT
LAFLVTVVNRLLTRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLKFALVYG
GVDYDKQRELLQKGADVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDI
RFLLRRMPIRTERQTLLFSATLSHRVLELAYEHMNEPEKIVVETEFITAAKVRQKVYFPA
DEEKIPLLLGLLSRSEGARTMVFVNTKAWVERVARALERGGYRVGVLSGDVPQKKRESLL
NKFQKGQLEILVATDVAARGLHIDGVSHVYNYDLPFDAEDYVHRIGRTARLGAEGDAISF
ACERYAMSLPDIEAYIEQKLPTLPVDAELLVALPRTPREIPPGEEGDDDNESIGSIFKEA
REQRAADDARRGVTSRGSRSGGPGAGRSGGRSEGRRDGAPPRRERPRSEEGAAKPADVAG
AEAAAPRPPRKPRVEGAVTDAAHPGANPAAEGERAPRKRRRRRGGRRIEGAEGANPAQDA
TTSAAVAKPSSAGAPRPQSAKPAASKPAAPASAPAAGEAKPSLLGRIGRKLKSLVARPPR
TQH

NT seq 1812 nt +upstreamnt +downstreamnt
atgagcgacaagcctttaaccgacattacgttttcctccttcgacctgcacccgagcctg
ttggctggccttgaggccgccgggttttcgcgctgcacgccgatccaggcgctgactttg
ccgatcgcgctgactggccgcgatgtggccggccaggcccagacgggcaccggcaagacg
ctggcctttctggtcacggtggtgaatcgcctgctgacccgcccggccctggccgagcgc
aagcccgaagacccgcgcgcgctgatcctggcgccgacgcgcgagttggccatccagatc
cataaggacgcggtcaagttcggttccgacctgggcctgaagttcgccctggtctacggc
ggcgtggattacgacaagcagcgcgagctgctgcagaagggcgccgacgtcatcatcgcc
acgcccggccgcctgatcgactacgtcaagcagcacaaggtcgtatcgctgcacgcctgc
gagatgtgcgtgctcgacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgccgatccgcaccgagcggcagaccctgctgttctcggcg
acgctgagccatcgcgtgctcgagctcgcctacgagcacatgaacgagccggaaaagatc
gtcgtcgagaccgagttcatcaccgccgccaaggtgcgccagaaggtgtacttcccggcc
gacgaagaaaagatcccgctgctgctgggcctgctgtcgcgcagcgaaggtgcgcgcacg
atggtgttcgtcaacaccaaggcctgggtcgagcgggtggcgcgcgcgctggagcgcggc
ggttaccgcgtcggcgtgttgtccggcgacgtgccgcagaagaagcgcgagtcgctgctc
aacaagttccagaagggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggc
ctgcacatcgacggcgtcagccacgtctacaactacgatctgccgttcgacgcggaagac
tacgtgcaccgcatcggccgcaccgcgcgcctgggcgccgagggcgacgcgatcagcttc
gcctgcgagcgctatgcgatgagcctgccggacatcgaggcctacatcgagcagaagctg
ccgacgctgccggtcgatgccgagctgctggtcgcgctgccgcgcacgccgcgcgaaatt
ccgccgggcgaggaaggcgacgacgacaacgagagcatcggttcgatcttcaaggaagcg
cgcgagcagcgcgccgccgacgatgcgcgccgcggcgtgaccagccgcggcagtcgttcc
ggcggcccgggcgcgggccgcagcggcggtcgcagcgaaggccgccgcgatggcgcgccg
ccgcgtcgcgaacgtcctcgcagcgaagaaggcgcagccaagccggccgacgtggccggc
gccgaagccgccgcgccgcgtccgccgcgcaagccgcgggtcgaaggcgcggtgaccgat
gccgctcatccgggcgcgaatcctgcagccgaaggcgagcgcgcaccgcgcaagcgtcgc
cgccgtcgcggtggccgtcgcatcgaaggtgccgagggtgcgaatccggcccaggacgct
acaacgtccgccgccgtcgccaagccgtcgtccgctggcgcgccgaggccgcagtcggcc
aagccggcggcgagcaagccggccgcaccggcctcggcaccggccgccggcgaagccaag
ccgtcgctgctgggccgtatcggccgcaagctcaagtcgctggtggcgcgtccgccgcgc
actcagcactga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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