KEGG   Lysinibacillus varians: T479_00370
Entry
T479_00370        CDS       T03062                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lgy  Lysinibacillus varians
Pathway
lgy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lgy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    T479_00370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgy03400]
    T479_00370
Enzymes [BR:lgy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     T479_00370
DNA repair and recombination proteins [BR:lgy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      T479_00370
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD Helicase_C CarD_TRCF_RID ResIII AAA_16 MFD_D3 RecG_dom3_C AAA_22 UB2H IstB_IS21 UBA
Other DBs
NCBI-ProteinID: AHN20110
UniProt: A0A806LLU6
Position
82590..86102
AA seq 1170 aa
MEVLRQLVSQDKHITSFLQEIQSGNTASQLITGLTGSARPVMVDALFEHVQKPIYIVSPN
LLQAQKMADELVGLLGEEHVHYYPADEFIAADLAVASPELRAERIATLDCLARGEKAVYI
IPIAGLRKMMPPKEQWIHYFLQTAVGDEVQIEEWLQTLVAMGYVRNSMVTTPGEFALRGG
ILDIYPPYLEAPIRIELFDTEVDSIRTFSADDQRSIDKLREVRILPASEVILTMEERIAL
AGRLESALATSLKKVKKQETKELLYQHIQYDIELLQQGNLPDFVNKYGSLLYDKTAYLGD
YFAQNGIVLFDELGRIQEVMDAWEREEEEWFLSLIEEGKMVHDVKPAFSLKEILAMLSQQ
KLYFSLFSRTFAGITFSKTTNFSCKPMQQFHGQMALLQSEVERWQLGKFTVLIVARDKNR
VKRVQEMLEEYDIHATIGEPHDPGLYIVEGGLSSGFELPLQRLAIVTEDELFKQQAKKKS
RPQKMTNAERIKSYTEIKAGDFVVHVHHGIGKYIGVETLVVNGTHKDYLHIRYRADDKLY
VPVEQIDLIQKYVASEDREPKLHKLGGAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKG
HAFAPDNDDQRNFEASFPYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRDRFQDFAINVGLLSRFRTKKEQVATLKGLK
EGQVDIVIGTHRILSKDLTFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARKVEEIQMLVPEARIGYAHGKMTESQLESVILAFIEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAIAERQTGVKKEEKPEIEI
LLNVDAYIPDAYIPDGYQKIQMYKRIKAMDQVDEYEEIMEELQDRFGDLPIETERLLRIA
RMKIWGLEMGVSSIKEKQKVISILLSEEGSAKVDGSKIVSETMKFERAVGFGMDSMQLIL
TIDERKCIKYHHFDILEEIMQIIANSKKNM
NT seq 3513 nt   +upstreamnt  +downstreamnt
gtggaagttttacgacagcttgtgtcgcaggacaaacatatcacatcatttttacaggag
attcagagcggcaatacagcatcacagcttattacaggtttaacaggaagcgcacgacca
gttatggttgatgcgttatttgaacatgtgcaaaaacccatctatattgtgtcacccaat
ttattgcaggcgcaaaagatggcggatgagcttgttgggttattaggagaggaacatgtt
cactattacccagccgatgaatttattgctgctgacttagcagttgcctcgccagagctt
cgagcagagcgtattgcgacgcttgattgccttgcgagaggtgaaaaagctgtttatatt
atcccaattgctggtttaagaaaaatgatgccgccaaaagagcagtggattcattatttt
ttacagacagcagtcggagacgaagtacaaattgaggaatggttacagacgctcgtagct
atgggctatgttcgtaattcaatggtaacgacacctggggagtttgcgttgcgtggaggg
attttggatatttatccgccctatttagaggcgccgattcgaattgagctatttgataca
gaagtggactccattcgtacattttctgcggatgaccagcgttcgattgataaattgcga
gaagtgcgtattttaccagcatcagaagtaattttgacaatggaagagcgaattgcttta
gcaggtcgattagaaagtgcgctagcgacaagcttgaaaaaagttaagaagcaggagaca
aaagagctgctgtatcaacatattcagtatgatattgaattgttgcaacaagggaactta
cctgactttgtaaataaatatggctcgttgctatatgataaaacagcttatttaggcgac
tattttgcacaaaatggtattgtattatttgatgagctaggtcgtattcaggaggtaatg
gatgcctgggaacgtgaagaggaagaatggtttttatcgttaattgaagaagggaaaatg
gtacatgatgtgaaaccagccttttctttaaaggaaatactggcgatgctgtcgcagcag
aagctttatttctcgctattttctcgtacatttgcgggtattaccttttctaaaacgact
aatttttcatgtaaaccgatgcaacaattccacggacaaatggcattattacaaagtgaa
gttgaacgatggcagcttggtaaatttaccgttctaatcgttgctagagataaaaaccgt
gtgaaacgtgtacaggaaatgcttgaggaatatgatattcatgcaacaattggagagcct
catgacccaggtctatacattgtagaaggcggattatcgagtggttttgaactaccattg
cagcgtctggcaattgtgacagaggatgaattatttaaacaacaagcaaagaaaaaatcg
cgccctcaaaagatgacaaatgcagagcgtattaaaagctatacagaaattaaagctggc
gactttgtcgtgcatgtgcatcatgggattgggaaatacattggtgtagaaacgctagta
gttaatggcacacataaggattacttgcatatacgctatcgtgcagacgataaattatat
gtacctgtggagcaaatcgatttaattcaaaaatatgtggcatctgaagaccgcgaaccg
aagctacataaattaggtggagcagagtggaaaaaagcgaaagcaaaggtttcctctgcc
gtacaagatattgcagatgatttaataaagctatacgccaagcgagaagcagaaaaaggg
catgctttcgcaccggataatgacgatcaacgtaattttgaggcatcgttcccttatgaa
gaaactgaggatcagcttcgttccatagtggaagtgaaacgtgatatggaacgtgaacga
ccgatggaccgccttgtatgtggtgacgtgggttatggtaaaaccgaagtagccattcgt
gcagcttttaaagccattcaggacggtaaacaagttgcctttttagtgcctacgacgatt
ttagcgcaacaacactacgagacaatccgtgatagatttcaggattttgctatcaatgtc
ggcttattatctcgtttccgtacgaaaaaagagcaagtagcgactttaaaaggattaaaa
gaagggcaagtagatattgtaatagggactcatagaatcttatctaaagatttaacgttc
caagatcttggcctattaattgtagatgaagaacagcgttttggtgttacccataaggaa
aaaataaaacaattaaaaacgaatgtggacgttttaacattaaccgcaacgcctattccg
agaacgttgcatatgtctatggtaggtgttcgtgatttatcggttattgagacacctcct
gccaatcgattcccagtacaaacctatgttatggagcatagtggggcacttgtgcgcgaa
gccattgagcgagaaatggcgcgtggtggtcaagtattttacttatacaatcgagtagag
gatatggcacgtaaagttgaggagattcaaatgcttgtcccggaagcgcgtatcggctat
gctcatggcaaaatgacggaatcgcaattggaatctgtgattttagcctttattgaaggg
gattatgatgttttagtaacgactacaattatcgaaacaggtgttgatattccgaatgta
aacacactgattgtccatgatgcagatcgcatgggcttagcacagctttaccaattacgt
ggccgtgtaggtcgctcaaatcgagtggcatacgcttactttatgtatcaacgtgacaaa
gtacttacggatgtagctgagcaacgattacaagcgataaaagagttcacagagctcgga
tctggatttaaaattgctatgcgtgatttatccattcgaggggctggcaatttattaggt
gcgcaacaacatggctttattgattcagttggttttgacttgtactcccaaatgctagaa
gaggccattgcagagcgacaaactggcgtgaaaaaagaagagaaaccagagatagaaatt
ttactcaacgtggatgcttatattcctgatgcgtatataccagacggctatcaaaaaatt
cagatgtataagcgcattaaagcgatggaccaagtggatgaatacgaagaaattatggaa
gaattacaagaccgttttggtgatttaccaattgaaacagaacgattgctgcgtattgca
cgcatgaagatttggggattagaaatgggcgtttcttctattaaggaaaagcaaaaggtc
atctccattttgctatctgaggaaggttcagccaaggtggatggaagtaaaattgtaagc
gagacgatgaagtttgagcgagctgttggcttcggtatggatagtatgcaattgatattg
acaattgatgagcgtaaatgcataaaataccatcattttgatatattagaagaaataatg
cagattattgcaaattccaaaaaaaatatgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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