KEGG   Lysinibacillus varians: T479_10330
Entry
T479_10330        CDS       T03062                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lgy  Lysinibacillus varians
Pathway
lgy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lgy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    T479_10330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgy03400]
    T479_10330
Enzymes [BR:lgy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     T479_10330
DNA repair and recombination proteins [BR:lgy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     T479_10330
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M
Other DBs
NCBI-ProteinID: AHN21765
UniProt: A0A806LJ61
Position
2131232..2133049
AA seq 605 aa
MLLVEANEPPKGDDWLYEGKYDGFRCLLQWTGEEPILKSRNGNVLNHLFPEIIDYCRSLY
NQIKEFLPLVFDGEIVYLINNYKSEFAIVQQRGRMQKKEVIAEHATSFPCHYIVFDLLSY
QGESQMNRYLKTRKQQLNTLFTSLKLPTAIKYEENHRLQAIDVFEDSQTLWHFIKIYNGE
GIIAKKKTSKWQEAVRSTHWLKIKNWKIVTVIVNKFDKGNGYFHGCVHRQGVLTEVVVFR
HGMKKDELNTLITFFQANGQQNNETWQLEPSICIDIACIDFDGSKLREPRFHAFRLEMEH
QYCNWQLMQRQLMPIPDSVPVTHPNKPVWPAIAITKEDYLYYLQLVSPFILPFLRNRPIT
LIRFPHGVPGESFYQKSSPEHLPAFVETERMSEHHSILCNNLETLLWLGNQLALEFHIPF
QTIDTEKPTEIVFDLDPPSVDAFSLAISGALHLKEIFDYFKLQSFVKTSGGKGLQVYIPL
PFNTFSYEQVRLFTEFVCRFLCEQKPELYTIERLKKNRKDRLYLDYVQHAEGKTIISPFS
TRGNEMGLVATPLHWNEVNDKLSPEQFTIPAVIERIKRVGNPLIHFQAIGEEQDFQAVLQ
HLNNQ
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgttattagtagaagcaaatgaaccgccaaaaggagatgattggctttacgaagggaaa
tatgacggattccgctgtctattacaatggactggtgaagagcctattttgaaaagtaga
aatggcaatgtgttaaatcatttgtttccggaaattattgattattgcagaagtctttat
aatcagatcaaagaatttttaccgttagtatttgacggagaaatagtgtatttaatcaac
aactataaaagtgaatttgcaatcgtgcaacaacggggaagaatgcaaaaaaaagaagtg
attgctgaacatgccacatcctttccttgtcattatattgtttttgatttactttcctat
caaggggaaagtcaaatgaatcgctatttaaaaacgcgaaaacagcaactaaacactctt
tttacatcgttaaagctaccgactgctattaaatatgaagaaaaccatcgtttacaagca
attgatgtttttgaagatagccaaactttgtggcatttcatcaaaatttataatggtgaa
ggtattattgccaagaaaaagacgagtaaatggcaggaggctgtacggtcaacacattgg
ctaaaaattaagaattggaaaattgtcacagtgattgtgaacaaatttgataaaggaaat
ggatattttcacggttgtgtgcatcgacagggtgtgctaacggaagtggttgtttttagg
catgggatgaaaaaggacgagttaaatacccttattacattttttcaagcaaacgggcaa
caaaacaacgaaacatggcaattagaaccatccatctgtattgatatcgcatgtatcgac
tttgatggtagtaagttaagagaacctcgttttcatgcctttcgattagaaatggaacac
cagtactgtaattggcaacttatgcaacgccagcttatgccaataccggatagtgtgcca
gtcacgcatcccaacaagccggtgtggcctgctatcgcgattacaaaagaggactatttg
tactatttacagcttgtatcaccctttatactgccatttttacgaaatcgacctattacg
ttaattcgttttcctcatggggtaccaggagagagtttctatcaaaaaagcagtccggaa
catctacctgcatttgtcgaaacagaaagaatgagcgaacatcatagtatcctatgcaat
aatcttgaaacactgttgtggttagggaaccaacttgcattagaatttcacatccctttt
caaacgattgacactgaaaagcctacagagattgtttttgacctagatcctccttcggtc
gacgcattttcacttgccataagcggtgcactacacttaaaagaaatatttgattatttt
aaactacagtcttttgttaaaacttctggtggcaaaggtttgcaagtttatattccatta
ccattcaatacattttcttatgaacaagttcgcctttttacagagtttgtctgtcgtttt
ttatgtgagcaaaaacccgaattatatacgattgaacgtttaaagaaaaatcgcaaagat
agattgtatttagattatgtgcaacatgcggaagggaaaaccattatatcgccgttttcc
accagaggtaacgaaatgggcttagttgcaacacctctacattggaatgaagtaaacgac
aaactatcaccggaacaatttacgatacctgctgttatagagcgaatcaaacgagtgggt
aatccattgatccattttcaagcgataggggaagaacaggactttcaggcagtgcttcag
catttaaataaccaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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