KEGG   Lysinibacillus varians: T479_15735
Entry
T479_15735        CDS       T03062                                 
Name
(GenBank) hypothetical protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lgy  Lysinibacillus varians
Pathway
lgy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lgy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    T479_15735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgy03400]
    T479_15735
Enzymes [BR:lgy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     T479_15735
DNA repair and recombination proteins [BR:lgy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     T479_15735
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_4 SH3_13 UvrD_C_2 AAA_11 Viral_helicase1 AAA_22 AAA_12 DEAD nSTAND3 TsaE AAA PIF1 AAA_16 NACHT AAA_28 UvrD_C UvrD-helicase NTPase_1 AAA_17 AAA_18 AAA_5 BAG6 SLFN-g3_helicase
Other DBs
NCBI-ProteinID: AHN22617
UniProt: A0A806LKE4
Position
complement(3129000..3131444)
AA seq 814 aa
MTENLDLFELNKLFILGRPIVSIFHNVQNMYSIVRVKIQETNLQYEDKEIIVVGYFPQLQ
MDEQYRFTGTMRQHPKYGVQFQVETFTKEVPATEQGIVHYLSSDLFVGIGKKTAETIVEK
LGPNTIRLILEDPNVLDGVPRLSAEKKEVIHRTIEQNLGLERVMIQLNEWGFGPQLGMKI
YQTYRTETIDFLTENPYRLIEDVDGVGFFRADELGAKLGITGNHPDRIKAAILHILNTAA
LSDGHVFLDAEHVLPQVKDMLEQSQRQEIPYEAISKACIDLREENKIYGEETRLYLPSLY
FSEIGIASKIIALTERNSQAKHFSKDEIRKAIGETEALLSVTYAETQAFAIEQALNSAVM
ILTGGPGTGKTTVVRGIVEVYAKLHGLSLNPKEYAQKEEPFPIILCAPTGRAAKRLAEST
ELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKSLHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASQQIPTVELTDVYRQAEGSTIIELAHQIKRGTIPNDLTMK
TSDRSFIKASSEQVANVVTQVVKSAVTKGQEIRNIQVLAPMYKGPAGIDNLNKLIQALVN
PNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMGEVISIIKAKETVEKQDLLVV
SFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLASGLQRTDDLQRFTSLRARLNPMEASNEVTLVEETQTQQNEENNQQE
DATTVLQLTVETLPSIHPMIGMDGISPYDFMDES
NT seq 2445 nt   +upstreamnt  +downstreamnt
atgacagaaaatctagatttatttgaactgaataagctatttattcttggacgtccgatt
gtctctattttccataatgttcaaaatatgtattctattgtgcgcgtgaaaattcaagaa
acaaatttgcaatatgaagataaagaaattattgtcgttggttatttcccacaattgcaa
atggacgaacaatatcgttttacaggaacgatgagacagcatccaaaatatggtgtacaa
tttcaagttgaaacctttacaaaagaagtgcccgcaactgagcaaggtatcgttcattac
ttatcgagtgatttatttgttggtattggaaaaaaaacggctgaaacaattgtagagaaa
cttggacccaatacaatccgtcttatattagaagacccgaatgtccttgatggtgtacca
cgactatctgctgaaaaaaaggaagttattcatcgtaccattgagcaaaatcttggattg
gaacgggttatgattcagttaaatgaatggggatttggcccgcagctcggtatgaaaata
tatcaaacatatcgtacagagacgattgattttttaactgaaaacccttatcgactcatt
gaagatgtggacggtgtcggtttctttcgggcagatgagcttggtgcaaaattaggtatt
acaggcaatcatcctgaccgtattaaggcggctattttacatattctaaatacagcagcg
ttatcggatggtcatgtatttttagatgcggaacatgtattaccacaagtgaaagatatg
ctggagcaaagtcaacgccaagaaataccatacgaagcaatttccaaggcatgtatcgat
ttgcgtgaggaaaataaaatctatggtgaagaaacgagactatatttgccatctctatat
ttttcggagattggtattgcctcaaaaataattgcgctaacggaacgcaatagtcaagcg
aagcattttagtaaagatgaaattcgcaaggcaatcggcgaaacagaagcattgttaagt
gtcacatatgcagaaacacaagcttttgcaattgaacaagcacttaattcagctgtcatg
attttaacaggtggtcctggtacaggaaaaacgacggttgttaggggcattgttgaagta
tatgccaaacttcacgggctttcactaaatccaaaggaatatgcgcaaaaagaagagcca
ttccctattattttatgtgcaccaacaggtcgtgcagctaaacgtctagctgagtctacg
gaactacctgcgatgactatccaccgcttattaggctttacaggtcaggagaaagaggaa
gaaacggagcgagaggttactggaaaactgatcattgtcgatgaaatgtccatggtagat
acatggcttgcccaccaattattaaaatcattacatgaggatgtacaagttgtttttgtt
ggcgatcaagatcagctaccgccagtaggtccaggacaagtgctcaaagatttacttgct
tcgcaacaaataccgactgttgaactgacagatgtttatcgtcaggcggaaggttcaacc
attattgaactcgcccatcagattaaacgtggtacaattccaaatgatctaacgatgaaa
acatcggatcgttcctttattaaagcttcttcagagcaagtggcaaatgttgtaacacaa
gttgtgaaaagtgcagtaacaaaagggcaagaaatccgaaatatccaagttttagcaccg
atgtataaaggaccagccggaatcgataacttaaataaattgattcaagcgcttgtcaat
ccgaatgatactggtacaagaaaggaacttgtctttggtgatgtaacgtatcgcataaag
gataaagtattacagcttgtaaaccagccagaaagcaatgtttttaatggagatatgggt
gaagtcattagtattattaaagcaaaggaaacggtggagaagcaggatttacttgtcgtg
tcttttgatggaattgaagtaacttatcagcgcagcgatcttaatcaattaacattggct
tattgttgctccattcataaatcacaaggttcagaatttcaaacggtgattatgccagtg
gtgcgtggctattcgaaaatgctacgtcgtaatttattatatactggtattacacgtgcg
aaaaatttcttaattttatgtggtgaaccagatgtgctagctagcggtttacaacgaaca
gatgatttacaacgcttcacgtctctgcgcgcacgacttaacccaatggaagcatctaat
gaggttacattagtggaggagacgcaaacgcaacaaaatgaagagaacaatcaacaagag
gatgctacgactgtgctacagctaacggtcgaaaccttaccatccatccatccaatgatt
ggaatggatggcatatctccatatgattttatggatgaatcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (35)   

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