KEGG T04898: 105668653

Linepithema humile (Argentine ant): 105668653

Entry

105668653         CDS       T04898

Name

(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain-like

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

lhu Linepithema humile (Argentine ant)

Pathway

lhu04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:lhu00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    105668653
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:lhu00536]
    105668653
Glycosaminoglycan binding proteins [BR:lhu00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   105668653

SSDB

Motif

Pfam:

Collagen COLFI Laminin_G_2 Laminin_G_1

Other DBs

NCBI-GeneID:

105668653

NCBI-ProteinID:

XP_012216534

Position

Unknown

AA seq 1726 aa
MRARDNVKWQWRMPQPSWIMYFVQLLFLILITSGLQPTTADITLRDMTKYVGNLIEATRI
QEEPSVTTTQSRCRNSSFAYNISETTTLMAPISSLFPSGLPRDFSILIVAKPEASEIKQK
IVXMSVDDPAPLLTIYDYSNKEQLILSLGRDINILYGIDSDDEETSISFGVDISDDEWHR
LGISIKGDSVTIILDCDRHITKKLQRNQKKMITGIVMIRQQLSGDLYLGGLEMLMIAPNP
DAAYEICTAFAPNCKYLSRLDYSSSLHINGDNYEKKNETGSNKDDFYLLSHNSTTEHPTP
YQVETTTTTAFVYETDSNYRQNYGIPTIDPYNGTEWNNQQNYRIPTIDSYDEEHLRRTHN
KQDYIIRGPSGPRGFPGPPGTPGPPGRKGEQGHDGLPGQQGVPGPPGNVFVIPSLSRQGN
EKGPDSLTEMLSQMISQHMLAMRGIEGPMGLTGIPGPQGPSGLQGQKGEPGDIGESGPRG
EIGSPGNPGREGRRGRPGRDGERGLSGPPGIKGEQGPIGLPGLPGDKGERGVAGIPGEPG
LPGHEGMQGEDGPPGLPGLPGEMGPRGFIGPRGFPGLPGNPGVSGNEGPPGAKGNTGPPG
PPAAPGQPGPAGPIGPLGLQGPPGPIGLVGPQGKPGIPGLPGADGSPGLPGNPGIPGVKG
EQGPLGPQGPVGFPGVRGVKGDDGQRGSPGERGEKGERGLEGEKGDIGAKGEPGVPGPQG
IPGLEGLEGSKGFEGPRGETGSAGPPGEKGKIGMPGFAGYPGNPGEKGDRGQSGAQGSSG
DKGERGSSGLQGERGELGPRGFRGTRGRRGAEGLPGPKGDTGQPGPPGSSGEIGSPGVEG
LRGFIGLPGPPGLDGKDGVSGPPGERGPIGETGPAGLPGSPGVIGPQGSTGESGPPGEPG
APGNPGLPGETGPPGEQGKEGLPGPPGLMGPKGSPGSIGLPGFPGERGLSGPPGIPGSKG
EIGPVGAQGPSGDKGAQGDPGKDGQPGLEGKQGSKGKKGSIGLKGEKGESGLPGSAGHDG
LPGQRGLPGPPGPVGIPGEDGDKGNIGPPGEKGFKGSQGETGPAGPQGSQGLRGEPGLTG
PSGEKGLSGEIGQRGSKGEDGLIGAIGPAGPAGLSGLPGFPGEKGEIGDPGAAGPIGPPG
VRGEQGRTGPRGHKGAPGPPGPEGRQGEKGDSGIPGHPGTPGIEGKQGEKGPSGAKGDDG
KEGPSGPPGPRGLIGFEGPKGDVGIPGFPGPPGEPGLIGEKGEPGKDGEEGRAGDPGIPG
EAGPPGKEGLPGPHGKSGPEGPAGQQGNTGLPGEKGDTGPAGAPGLQGPIGSQGPPGTLG
LPGERGLPGVAGESGRPGIPGAVGAPGIIGPAGSKGPKGDRGRRGNKGHLGDLGHVGIKG
DQGEKGNKGESGVPGPEGLKGNSGPAGPVGFRGEQGSLGPLGVPGLPGPKGNAGNDGMRG
NTGPPGPPGPPGLPGPSSSLEQLNFGDIIPSLLLRENESSRRKRNVSENMNEEEKFDTKF
LDIYASIFNIQQELDQRRRPTGTRDYPVRTCRDLFYGHSNFEDGWYWIDPNLGMPDDAIY
VYCNISNKGETCIFPDIHSSQMPNIPWKKENNKNDWYSRLRGGFKITYETIGAVQMNFLQ
LLSQEVYQNFTYTCMNSVAWYNSNNPNNGYDLSLRLLGDNDDEFSYNGFKMQVLVDGCKN
RSGKTETVFLVHTKNPQQLPLIDFYPVDYGLPHQTFGFVVGPACFK

NT seq 5181 nt +upstreamnt +downstreamnt
atgcgggcacgagacaacgtgaaatggcaatggagaatgccgcaaccctcgtggattatg
tattttgtccagctactgtttctaatattgattacatccggtcttcagccaacaacggcg
gatatcacactgcgagatatgacaaagtacgttgggaatttaatcgaagccacaagaata
caagaggaaccttccgtgacgacaacgcaaagtcgttgtagaaatagcagttttgcatac
aatatttcggaaaccacaaccctgatggctcctattagttcgctatttccgtccggttta
ccacgggatttctctattttaattgttgcaaagccagaagctagtgagattaaacagaaa
attgtttaaatgtctgtagatgaccccgcgccacttctcaccatctacgattatagcaac
aaagaacaattgattctttcattgggtcgcgatatcaatatcctttacggcatcgattcg
gatgacgaggaaacgtcgatttcttttggcgttgatatttctgatgatgagtggcatcga
ttgggaattagcatcaaaggtgactccgttacaattattctcgattgcgacagacatatc
acaaagaagctacaaagaaatcagaagaaaatgattacagggatcgtcatgatccggcag
caacttagcggcgacttgtatttgggaggtctcgagatgctgatgattgctccaaatcca
gatgcagcttatgaaatctgcactgcatttgcgccaaactgtaaatacttatcacggttg
gattatagttcttctttgcacattaacggagataattatgaaaagaaaaacgagacaggc
tcgaataaagatgatttctaccttttgtctcataattctacaacagaacatcccacacct
tatcaagtagaaacgacgacgacaactgcatttgtgtatgaaacggattcgaactatcga
cagaattatggaataccgacaattgatccttacaatggaacagaatggaacaatcaacag
aattatagaataccaacgattgattcttacgatgaagaacatcttcgtagaacgcataat
aaacaagattatattattagaggcccatcaggacctcgtggatttcccggaccgccggga
acacccgggcctccaggaaggaaaggcgaacaaggtcatgatggacttcctggacagcaa
ggtgtgcccggtccgccaggtaatgtctttgtgataccctcgttgagtcgacaaggcaac
gaaaaaggaccagactcgttgaccgaaatgctaagccaaatgatatcgcagcacatgctc
gcgatgagaggcatagagggtccgatgggcctcacgggcattccggggcctcagggacca
tctggacttcagggtcaaaaaggagagcccggcgacatcggcgaatctggacctagaggg
gaaataggaagtcctggaaatcctggcagagagggtagaaggggtcgccctggccgagac
ggtgaacgtggtctcagtgggccaccaggaataaagggcgaacaaggaccgataggattg
cctggtctgcctggtgataaaggcgaacggggagttgcgggaatacccggcgagccaggt
ttaccaggccatgaaggaatgcaaggtgaagacggtccccctggtctgccgggtctacct
ggtgaaatgggtccgagaggatttattgggcccagaggtttccccggactaccaggtaat
cccggtgtttctggaaacgaaggcccaccaggtgccaaaggaaacactggtccaccaggt
ccacccgctgctccgggtcagcctgggcctgcaggcccgataggaccacttgggcttcaa
ggtccaccagggccaattggtttagttggtccacaaggtaagcctggtattcctggtctt
ccgggtgcagacggatctcctggtcttccgggtaatcctggaatacccggagtgaaaggt
gaacaaggaccattaggaccgcagggtccagtcggctttccgggtgtacggggtgtgaaa
ggcgatgacgggcagcgtggttcgccgggcgaacgcggtgaaaagggcgagagaggtttg
gagggagaaaagggtgacattggagcaaaaggtgagcctggagtaccggggccgcaagga
attccaggccttgaaggattggaaggatctaagggcttcgaagggcctcgtggtgaaact
ggatctgccggcccgcccggcgaaaaagggaagataggcatgcctggatttgccggatat
cctggaaatcctggagagaaaggagatagagggcaatcgggagcacaaggctctagcggc
gataaaggagaaagaggaagcagcggattgcagggagaacgtggtgaattaggaccgagg
ggttttagaggaactcgtggtagaagaggcgcggaaggattgccaggaccaaagggtgac
accggtcagccaggaccaccaggatcatcaggcgaaatcggctctcctggtgttgaaggt
ttgcgcggatttataggactgccgggcccaccaggtcttgacgggaaggatggtgtatca
ggaccacctggcgagcgcgggccaataggagaaaccggacccgcagggcttccgggaagt
cccggtgttatcggtcctcaaggatcaactggagaatcgggtccgccaggtgaacctgga
gcacctggtaatccggggcttcctggagaaactggcccaccaggtgaacaaggaaaagag
ggactgccgggtccgcccggtttgatgggaccgaaaggatcaccaggttctattggactg
ccaggatttccgggcgaaagaggactgagcggtccaccgggaatacccggctccaaagga
gagataggacctgtcggagctcaaggaccgtctggcgataaaggtgctcagggtgatcct
ggtaaagacgggcaaccaggtttggaaggaaaacaaggatctaaaggaaaaaagggttcc
atcggacttaaaggcgaaaaaggtgagtctggactgcctggatctgcaggtcatgacggt
ctaccaggacaacgcggtttaccgggtccacctggaccggttggaattccgggcgaagac
ggcgataaaggaaatatcggcccaccaggagagaaaggattcaaaggctctcaaggagaa
acgggtccggcgggtccacaagggtcacaaggactacgtggtgagcctggtttaacgggt
ccttccggcgaaaaaggattatcaggggaaattggacagcgaggatcaaaaggcgaggac
ggtttaatcggagcaattggaccggctggaccagcaggattgtctggtttaccggggttt
ccaggagaaaaaggtgaaattggagatcctggagcggctggacctataggaccaccaggt
gttcgaggagaacaaggtcgaacaggaccgagaggtcataaaggtgcgcctggtccacca
ggtccggagggtcgccaaggtgaaaaaggagacagtggaattccaggacatcctggtaca
ccaggaatagaaggcaaacagggagaaaaaggtccttcgggagcgaaaggagatgacggc
aaggaaggaccatccggaccacccgggccacgaggactgattggttttgaaggaccgaaa
ggtgatgttggaatacctggttttcctggtccgcccggagaacctggtctcataggtgaa
aaaggcgaacctggaaaggatggtgaagagggtcgagcaggcgatccaggcataccaggt
gaagctgggccacctggcaaggaaggattaccgggtcctcatggaaaatccggtccagaa
ggcccggcaggtcaacaaggtaacacaggtttgcccggagaaaaaggagatacgggcccg
gctggagcaccgggacttcaaggacctatcgggtctcaaggtccgcctggaacgcttggt
ctgccaggagaaagaggcttgccaggagtagctggagaaagcggtcgtccgggtattcca
ggtgccgttggtgctcctggaattatcggaccggctggttcgaagggtccgaaaggtgac
cgaggtcgcagaggaaacaaaggacacttgggtgacctaggacacgtcggtatcaagggt
gatcaaggagagaagggaaataaaggcgagagtggagtgccaggaccggaaggattgaag
ggaaactctggacctgcaggtccagttggatttagaggggaacaaggatcgctcggtcct
cttggagtgccaggtttgcctggacctaaaggaaacgctggaaatgatggaatgcgtggt
aatacaggtccgccaggcccgcctggtccgccgggtttaccaggaccatctagctcactg
gagcagctcaatttcggcgacattattccgtcattgctgcttcgagaaaatgagtcgagt
agaagaaaacgcaacgtttcagaaaatatgaatgaagaagagaaatttgatacgaagttt
ttagacatatatgcatcgattttcaatatacaacaagaattggatcaaaggcgtagacca
actggtaccagagactatccggtgagaacatgcagagatttattttatggacactccaat
tttgaagatggctggtattggattgatccaaatttgggcatgcctgatgatgctatctac
gtgtattgcaacatttcgaacaagggtgaaacctgcatttttcccgatattcacagtagt
cagatgccgaatataccatggaagaaggaaaataataaaaatgactggtattcacgttta
cgaggtggattcaaaataacttacgagacaattggagcagtgcagatgaattttctgcag
ctacttagtcaagaagtctatcaaaactttacatacacgtgtatgaacagtgttgcttgg
tacaatagcaataacccgaataatggctacgatctctcgctgcgattacttggcgacaat
gacgatgagttttcatacaatggttttaaaatgcaagtccttgtagatggctgtaaaaac
cggagtggtaaaaccgagaccgtgtttttagttcatactaagaacccgcaacaattgccg
ttaatcgatttttatccggttgactacggattaccacatcaaacattcggcttcgtggtc
ggtccggcctgtttcaagtaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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