KEGG   Linepithema humile (Argentine ant): 105670045
Entry
105670045         CDS       T04898                                 
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
lhu  Linepithema humile (Argentine ant)
Brite
KEGG Orthology (KO) [BR:lhu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lhu03041]
    105670045
Enzymes [BR:lhu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105670045
Spliceosome [BR:lhu03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    105670045
SSDB
Motif
Pfam: HA2_C OB_NTP_bind Helicase_C R3H DEAD Ank_2 Ank_4 nSTAND3 Ank AAA_19 HA2_N AAA_22 PhoH Ank_5 ATPase AAA_7 UvrA_inter AAA_14 T2SSE AAA_11 SRP54 NB-ARC
Other DBs
NCBI-GeneID: 105670045
NCBI-ProteinID: XP_012218767
Position
Unknown
AA seq 1153 aa
MPRRRQQRHHPIGEDTRIAVNLTLKKLLDTPDQKELEFPSSYTAEERAYIHELARELGLK
SKSRGKGTNRFLTVYKREGSTIVQADAVIKLQKISKQSIYNLMQSFPLNHKECQDLLPPI
ERERPLSNDVNTNTKAMGRLNNSIPQVPQLKTNFDVLHFRKSLPIFNTREEVLNALSNHQ
VVIIAGETGCGKTTQIPQYILEHYQQKHQACRIICTQPRRLSAVSVAERVAFERDEKIGQ
TFGYQIRLESRVAPKTLLTYCTNGVLLRTLMGGDSALTTLTHIIVDEVHERDRFCDFLLI
ALKDALVKYRSLKLILMSATMDTTIFTKYFNKCTVINVPGRSYDVDVYFLEDILKMTGYM
TKEMHAKKKEFSKWTDKQKTLESWKQYKPQHSNRSTKSEKSLLPAPILAQQNDPIPEKVK
LEAWLIEEMDRSVFDAWVNGREDNFAQLLHFILSENVSVDYQHSETSITPLMAAAVRGCI
NTTEQLLNLGANLNLRSANDWTALDWAKSRNHTECAELIEAYMKTYDCTVPNNDLTHVAG
TSLSEEDKMLLDIYHHTFNDDNIDYNLLLELIFYIHLKMPAGSILIFLPGYDDIVMMREK
INADEKKMNQGLRYNLYVLHSNMQTCDQKKVFKPSPQGTRKIILSTNIAETSITIDDVVY
VIDSGKVKEKSFDALSGVCTLNSNWISQACAKQRKGRAGRCRRGICYRLFSSIRFNNMQS
YQTPEILRLPLQELCLFTKHLTPGNTPIAEFLDKALEPPSNVVTRNAVQLLKTIDALDPW
EDLTELGSHLLDLPIEPRLGKMLLYAVVLKCLDPILTIVCSLAYKDPFILPSQPSQKRAL
TAARKKFATGTYSDHMVVLRAFQGWQNARATGKERAFCEKNFISAPVMEMVVGMRTQLLG
QLRASGFVRARSPGDIRDLNSNSENWAVVKAALTAGLYPNLIRVDREHMQLRTQKEVKVF
FHPSSTLRDYPKSPRVTSAQTHAANVQSLPCDWLLYEEMSRTGRFCHVKVVTLVNPLTVA
LFSGPARLPMDVIYEAEAVPESESDSEVDESHEGTIFKLDDWVVFKLDPETAQLFLHLRQ
KWNALFLRRMKAPNKAMSALDEKVISTLVSVITNEEQACGLQQPSGIGQRPRPLIVDYYP
ANVRRDDYPERYF
NT seq 3462 nt   +upstreamnt  +downstreamnt
atgccacgtagaagacagcaaaggcatcaccccataggggaagacaccaggattgcagtt
aacctgactctaaaaaaattattggacactccagatcaaaaagaactagaatttccatca
tcgtacacagcagaagagagagcatatatccatgaactagctagagaacttggtctgaaa
tcaaaaagtcgaggaaaaggcacaaatcgatttttgacagtatataagagggaaggttca
actatagtccaagccgatgctgtgataaaattacaaaaaatctcaaaacagagcatatat
aatttgatgcagagttttccattaaatcacaaggaatgtcaagatttacttcctccaatt
gagagagaacgtcctcttagtaatgatgtaaatacaaacactaaagcaatgggcagattg
aacaacagtataccgcaagtacctcagttgaagacaaattttgatgtgctgcattttcgg
aaatctctgccaatttttaacactagagaagaagttcttaacgcattgagcaatcatcaa
gtggtcataattgcgggtgaaacaggatgtggcaaaactacacaaataccacaatacata
ttggagcattatcagcagaagcatcaagcttgcaggattatttgtacacaacccaggcgc
ttatcggctgtatctgtggcggaaagagtagcattcgagagggacgagaagatcggccag
accttcggatatcaaattagattggaaagcagagtagctccgaaaactctcctgacatat
tgcacaaatggagtattacttcgaactttaatgggcggtgattctgctttgaccacgctc
acgcacattatcgtcgatgaagttcacgagcgggacagattctgtgactttcttctgata
gctttaaaggacgcgttggttaaataccgttccttgaaattgatactcatgagtgcaacg
atggatactaccatcttcacaaaatatttcaacaaatgcacggtcatcaatgttcctgga
cgatcatatgacgtggacgtgtacttcctggaggatatattgaagatgactggttacatg
acgaaggaaatgcacgcgaagaaaaaggagttttctaagtggacggacaagcaaaagact
ctggagtcctggaagcagtacaagccgcagcattctaataggagcaccaagagcgagaag
agtctgctgcccgctccgattctagctcaacagaacgatcctataccggagaaagttaag
ctggaagcctggctgatcgaagaaatggacaggagcgtcttcgacgcgtgggtgaatggt
agagaagataattttgcgcagctcttacattttatactgtctgaaaatgtctccgtggat
tatcagcattccgaaacctctataacaccgttgatggctgccgcggttagaggctgcata
aacacgactgagcaacttctgaatttgggcgcaaatctcaatttacgatccgctaacgat
tggaccgcattggactgggcgaagagcaggaatcacactgaatgcgccgagctaatcgaa
gcgtacatgaaaacttacgattgcacggtgccaaataatgatctgacgcatgtcgccggc
acgtcgctctccgaagaagacaaaatgctgcttgacatttaccatcatacattcaatgac
gataatatcgattacaatctgttgctggaattgatcttttacattcatctgaagatgcct
gctggctctattttaatatttctgccgggatacgacgatatagtcatgatgcgggagaaa
ataaacgcggacgagaagaagatgaatcaaggtctacgctacaatttgtacgtccttcac
tcgaacatgcagacctgcgatcagaagaaggtgttcaaacccagcccacagggcacgcgc
aaaatcatcctgtctacgaatatagcggaaactagcattacaatcgacgatgtcgtgtac
gtcatcgactcgggcaaggttaaagagaagtctttcgacgctttatcgggcgtgtgcaca
ctaaactccaattggatatctcaggcttgcgcaaaacagcggaaaggcagagcgggcaga
tgtagaagaggcatctgttaccgcctgttctcttcaattcgatttaacaacatgcaatcc
tatcaaacgccggagatcctgcgattaccgttgcaagaattatgcttgtttacgaaacat
ttaacgcccggcaacacgcctatagccgaatttttggataaagctctggaaccgccgtct
aatgtggtcactagaaatgcagttcagttattgaagacaatcgacgccctggatccttgg
gaagatctaacggaattgggaagtcatttgttagatttgccgattgaaccgagactcgga
aagatgttgctatacgccgtcgttctgaaatgcttggatcccattttaacgattgtttgc
agcttagcatacaaggacccctttatattaccgtcacaaccgtcgcaaaagagagcattg
accgcagcacgtaaaaaattcgccaccggaacgtactcggatcatatggtggtcctgcgg
gcgtttcagggttggcaaaacgctagagcgactggcaaggaacgtgccttctgcgagaaa
aatttcatttccgctcccgtgatggagatggtggttggaatgcgcacacagctcctagga
cagttgcgtgcgtctggattcgttagagccagaagtcccggggacattcgggatctgaat
tctaattcggaaaattgggctgtggtgaaagcagccctgaccgcaggcttgtatcccaac
ttgatccgagtcgatcgagagcatatgcagctacggacgcaaaaggaagtcaaggtgttc
ttccatccctcgtcgaccttaagagattatccgaagtctccgagagtgacatccgcgcag
acgcatgcagcaaacgtgcaatctttaccgtgcgattggttactttatgaagaaatgagt
cgcaccggacgtttctgtcacgtgaaagtcgtcacgcttgttaatccactaactgtcgcg
ctatttagtggaccagctagattaccgatggatgtaatttacgaagctgaagctgtaccg
gaaagcgaatcagactcagaagttgacgagtctcacgaagggacaatctttaagctcgat
gattgggtggtatttaagttggatccggaaacggctcaattattcttgcatttgcggcag
aagtggaatgctttgttcctcagacgtatgaaagcaccgaacaaggctatgtcagcatta
gatgagaaggtcattagcactttggtgtctgtgatcacgaacgaagaacaagcatgcggc
ctccagcaaccctcaggcattggtcaacgaccacgtccattaatcgttgattactatccc
gcaaatgttagaagagacgattatccggaaagatatttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (22)   
   Pfam (22)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system