KEGG   Listeria ivanovii subsp. londoniensis WSLC 30167: JL58_12620
Entry
JL58_12620        CDS       T03401                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lia  Listeria ivanovii subsp. londoniensis WSLC 30167
Pathway
lia03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lia00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JL58_12620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lia03019]
    JL58_12620
   03016 Transfer RNA biogenesis [BR:lia03016]
    JL58_12620
Enzymes [BR:lia01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     JL58_12620
Messenger RNA biogenesis [BR:lia03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     JL58_12620
Transfer RNA biogenesis [BR:lia03016]
 Prokaryotic type
  tRNA degradation factors
   JL58_12620
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 TAPR1-like
Other DBs
NCBI-ProteinID: AIS60765
UniProt: A0A097B7Y3
Position
complement(2597790..2600171)
AA seq 793 aa
MEQKQMEEKIINLLTETPNKTFALEDLEIEIALNNADDFKLMVKSLVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKELDDIFIPPNEVKDAMNGDLVFATITKRK
SDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVIPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGHARSRGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDV
VNTSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSP
LDVEAQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDADGHVVNHEIF
ESIIKTTERMTYTDVNDILVEKEEALREKYAAIVPMLEAMQNLAEILRTKREKRGAIDFD
FKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSEK
QKRQREKPIDKTRNFKSSTKNNRNKRRTGKTEDAKPKSERKEDEWYTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq 2382 nt   +upstreamnt  +downstreamnt
gtggaacaaaaacaaatggaagaaaaaattattaatctattaactgaaacgccgaataaa
acattcgcgttagaagatttagagatagaaatcgctttaaataatgcagatgattttaaa
ttaatggtcaaatccttagtaaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgccctacctgaaaaaatggatttggtaaaaggaacattccgtgctcatgaa
cgtggttttggctttgttctcccagaagagaaagaattagatgatatctttatcccgcca
aatgaagtgaaagatgcaatgaacggagacttggtttttgcgactatcacaaaacgtaag
agtgataatttagcagagggtactattaagaaaatcgtcgagcggaaaaccacgcaaatt
gttggaacttatatggaagatttagctggcacgccaattgttatccctgatgataagcgc
ttatttggagaagtggaaattgatttagaagatggcttaaaaccagtagatggccataaa
gttatcgtcgaattaaccgaatatgcaaccggacatgctcgttctagaggtgttgtaaaa
tcaattattggccaccgaaatgatcctggggtggatattttatcgattatccataaacat
ggcatttctatcggattcccggaagaagtgatggaacaagtaagcaaagcgccagatgta
gttaacacatcggatattggtaaccgccgtgatttacgagatcaaatgattattacgatc
gatggggcagatgctaaagatttagatgatgcggttactgttaaacaacttccgaatggc
aattggaagctgggcgttcatattgcggatgtaacccattatgtgacagaaggctcgccg
cttgatgtcgaagcgcaagatcgcggaacgagtgtttatttggttgaccgggtaattccg
atgttgccacataaactatcgaatggaatttgctcgcttaacccgcaagtagaccgtttt
accatgagttgtgaaatggaaattgatgcagatggtcatgtagtcaatcatgaaattttt
gaaagcatcattaaaacaacagaaagaatgacctatacggatgtaaacgacattttagtt
gaaaaagaggaagcattacgcgaaaagtatgcagctatcgttccaatgcttgaagcaatg
caaaatttagcagaaatacttcgaactaaacgggaaaaacgtggtgcgattgattttgat
tttaaagaagctcgtgtagtagttgatgaagatggacatccagaagctgttgtaatgcgc
gaacgttcagctggtgagcacttgattgaagaatttatgcttgcggcaaacgaaacagtg
gcagaacatttccactggatggatgtaccatttatttatcgtattcatgaagatccaaaa
gaagataaactagctcgtttctttgaatttattactaatttcggcttaattgttaaaggg
actgctaatgatattcatccagcggccctacaacaagtgctagaagaagtaaaagggaag
cctgaagaaatggtcgtttcaactgtgatgcttcgttctatgcaacaagcgaagtatgat
acagtaagcgcaggacattttggtttatcaacagacttttatacgcattttacatcacca
atcagacgttatccggatttgatcgttcacaggctaattagagagtatttaattaacgga
gatgttcgtccagaaacactagaaaaacgtgctgaggagcttcctgagattgctgaacat
agctctaaaatggaacgtcgtgcagtggaagcagaacgtgaaaccgatgaactcaagaaa
acggaattcatggttgataaagttggcgaacgttttataggtatcattagttctgtaacg
aattttggcttatttattgaactacctacaacaattgaaggtttagttcacgttagtgct
atgaaaggtgattacttcaaatttcaccaaaaccaattagcgatgattggtgaacgtaca
ggtcaaatttatcgtattggtgatgaagtagaggtggaagtaacaaaagtagacgtagac
gctcgcgaaattgattttgcacttcgcagtgaaggtaaaccaggtccggttagtgaaaag
cagaaacgtcaacgtgaaaaaccaatagataaaacgagaaactttaagagtagtacaaaa
aataatcgtaataaacgccgaactggtaaaacagaagacgcgaaaccaaaatcagaacgt
aaagaagacgaatggtatacaaaaccgaaaaagaaaaagaagaaaaaacctttttaccaa
ggagtagcaaaagaaagcccgaaaaagaaaaaacgtcgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system