KEGG   Leptospira interrogans serovar Copenhageni: LIC_10035
Entry
LIC_10035         CDS       T00166                                 
Symbol
rnR
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lic  Leptospira interrogans serovar Copenhageni
Pathway
lic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LIC_10035 (rnR)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lic03019]
    LIC_10035 (rnR)
   03016 Transfer RNA biogenesis [BR:lic03016]
    LIC_10035 (rnR)
Enzymes [BR:lic01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LIC_10035 (rnR)
Messenger RNA biogenesis [BR:lic03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LIC_10035 (rnR)
Transfer RNA biogenesis [BR:lic03016]
 Prokaryotic type
  tRNA degradation factors
   LIC_10035 (rnR)
SSDB
Motif
Pfam: RNB OB_RNB S1 CSD2
Other DBs
NCBI-ProteinID: AAS68672
UniProt: Q72WA2
Position
I:41921..44176
AA seq 751 aa
MNIKKKQTTENKSVKSNRKKKTFDKSNKTKKERTDGFRENEIGKKILKYIQSRAGSVIQF
KDLNAKILREENQNSYGKKREKWEFQEKEREILETLKILETEGLIELEKKNIIINSNQKL
QGTISISKKGDGFVKLSSGVEIFVPNQYTQSAIQGDLVEVRPYGVGKKRRLEGEVTEILR
RGRDLYRMIVTEKEPKFIFGKLLDIDGEEKEGYLLRKTILTDLQEEIQSGDVLIVKLKEE
TEHEKNLYEVQFLRFESDTKEDLDLMRMLMKYNYNILYPENIILDLPEEVNESTVDDWNE
RVDLRNLKCITIDGEYSKDFDDAISFIEEKNRIRFYVHIADVSYYVRPGNDLDEEAYNRA
TSVYLGSRVVPMLPPELSESLCSLIAGKNRLAFTVEMEADWKGKITHAKYYKSIINVKER
YTYNKAESEILSGDSDNWIFRMNEFAKILRTKRIEDGRVDLNLKENKVVTDSEHNVIEIA
IQDRLQSHILIEEFMLSANIKVAEYIRKKKHPTLYRVHEAMNEEKIESLNAFLQLNATKI
LLKDSSYESIRSVLKELEAKPAERLFNMFLLRTFMQAYYSGEHLGHWGLGFEDYCHFTSP
IRRYPDLVCHRVLQNILLGKKPIYTPEEIVTFGLHCSHQERKASDAERDYYKLKACRYLE
KTGIKEFSATITGCRPHLIFVDLENPAVDACLFSSEFTDEGEIRLETDFSFYSKKYSKIY
TLGDKIEVELDRIDYEEIKIFVKMKKFQKKV
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgaatataaagaaaaaacaaacaacagaaaataaatctgtaaaatctaacagaaaaaag
aaaacgtttgataaatccaataaaactaaaaaagaaagaaccgacggttttcgtgagaat
gaaataggaaaaaaaatcttaaagtatattcaatccagagcgggttctgtaattcaattt
aaagatttgaacgcgaaaattctaagagaagaaaatcaaaactcttacggtaaaaaaaga
gaaaaatgggagtttcaagaaaaagaaagggagatattggaaacattaaaaattcttgaa
acagaaggattaatcgaattagaaaaaaagaatattattatcaattcaaaccagaaactt
caaggaacaatttctattagtaaaaaaggagacggttttgtaaaactttcttcgggagtc
gagattttcgttccaaatcaatatacacaatctgccattcaaggtgatttagtagaagtt
cgtccttacggagttggtaaaaagagaaggttagaaggagaagtcacggagattctcaga
agagggcgcgatctttatagaatgatcgtcaccgaaaaagagcctaagtttattttcgga
aaacttttggatatagacggagaggaaaaggaaggttatcttcttcgtaaaacaattctt
acggatcttcaagaggaaattcaatccggagacgttttgatagttaaattaaaagaagaa
acggaacacgaaaagaatctttatgaggtccagtttttacgttttgagtcagataccaaa
gaagatttggatctgatgagaatgttgatgaaatacaattataatattctttatcctgaa
aatataatattagatcttcctgaagaagtaaacgaaagcactgtggacgattggaatgaa
cgtgtagatcttaggaatctgaaatgtattacaatagacggagagtattccaaagatttt
gacgacgcgattagttttatagaggaaaaaaatcgaattcgattttacgtacatatcgcg
gatgtttcttattatgtaagaccgggaaacgatttagacgaagaagcatataatcgtgct
acttctgtatatttaggaagtcgggttgttcctatgttacctcccgagttatccgaaagt
ctttgttccttgattgccggaaaaaatcgtttggcttttaccgtggaaatggaagctgat
tggaaaggaaaaattactcacgcaaaatattataaaagcataataaatgtaaaagaaaga
tatacttataacaaagccgagtccgaaatcttatctggggattctgataattggatcttt
agaatgaatgaatttgccaaaattcttcgaacaaaaagaatcgaagatggaagagtggat
ttaaatttgaaagaaaataaagtggtcactgattccgaacacaacgtgattgaaatagcg
attcaagataggctccaatcgcatattctcatagaagaatttatgctttctgcaaatatt
aaagttgctgaatatattcgtaagaaaaaacacccgactttatatagagttcatgaagcc
atgaatgaagaaaaaatagaatccttaaacgcatttcttcaattaaatgccactaaaatt
ttactcaaagattctagttacgaatctattcgttcggttctaaaagaattagaagcaaaa
cctgcagaaagattgtttaatatgtttttattgagaacatttatgcaagcttattattct
ggagaacatttaggacattggggtttgggatttgaagactactgtcattttacgtctccg
attcgaagatatcctgatctggtttgccatagggttttacaaaatattcttttaggtaaa
aagcctatttatactccggaagaaatagtgactttcggtttgcattgttcacatcaggaa
cgcaaagcaagtgatgcagaaagggattattataaacttaaggcatgtcgctatttggaa
aaaactggaattaaagaattttcagcaacgatcactggttgtagaccacatttaattttt
gtagatctggaaaatcctgctgtagatgcttgtttattttcttctgagtttacggatgaa
ggtgaaattcgtttagagacggacttttcattttactctaaaaagtattctaaaatttat
actcttggagataaaattgaagtagaactggatcgaatcgactacgaagaaattaaaatc
tttgtaaaaatgaaaaaattccaaaagaaagtatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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