KEGG T04121: L63ED372

Limnohabitans sp. 63ED37-2: L63ED372_02711

Entry

L63ED372_02711    CDS       T04121

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

lih Limnohabitans sp. 63ED37-2

Brite

KEGG Orthology (KO) [BR:lih00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lih03032]
    L63ED372_02711 (gyrB)
   03400 DNA repair and recombination proteins [BR:lih03400]
    L63ED372_02711 (gyrB)
Enzymes [BR:lih01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     L63ED372_02711 (gyrB)
DNA replication proteins [BR:lih03032]
Prokaryotic type
  DNA Topoisomerases
   L63ED372_02711 (gyrB)
DNA repair and recombination proteins [BR:lih03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      L63ED372_02711 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3

Other DBs

NCBI-ProteinID:

ALK89910

UniProt:

A0A0P0MB70

Position

2854775..2857378

AA seq 867 aa
MTDDINPSEEAFTTAQPKIDANQAGASEGYGEGSIQILEGLEAVRKRPGMYIGDTSDGTG
LHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAS
EIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGKVHQIDFAKGFVQ
NRLLETVDGVEVSPMRVTGATDKRGTEVHFLPDVEIFTQNTDFHYEILAKRLRELSFLNN
GVRIRLKDERSGKEDDFSGAGGVKGFVDFINANKKVLHPNAFHANGERPADSYGGIPGTS
IGVEVAMQWNDGYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIAKYIEKNEIAKKQKVE
VSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDFLEERPNDAK
IICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPSLCEIYIVEGDSAG
GSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIVTLITALGTGIGKASAESGKSG
TDDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKA
GKEELYLKDGPALDGFLLRIALKDASISTGGAAPQVLTGETLEALARKHQVAEHVIARLS
NFMDAEALRAMADGVSLNLDTLEQAAACAPALQAKLRELNTTGIPAEVSAEFDVRTDKPI
LRISRRHHGNIKSSIITQDFVHGADYGALAEAAETFRGLLGEGAKASRGEGERQKEEKVG
DFRQAMHWLISEAERTTSRQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAIEADRVF
TMLMGDEVEPRRNFIEANALRAGNIDI

NT seq 2604 nt +upstreamnt +downstreamnt
atgaccgacgacatcaaccccagcgaagaagcgttcaccaccgcgcaacccaaaatcgat
gccaaccaagcgggcgcatccgaaggctacggcgaaggctccatccagattctggaaggc
ctagaagcggtgcgcaagcgccccggcatgtacatcggtgacacctctgacggcacgggc
ctgcaccacttggtgttcgaggtggtggacaactcgattgacgaagcgctggcgggccac
tgcgacgacatcgtcgtcaccatccacagtgacaactccatcagcgtgacagacaacggt
cgcggcatccccacgggcgtgaagatggacgacaagcacgagcccaagcgcagtgcgtct
gagatcgctttgaccgaactgcatgcaggcggcaagttcaaccaaaacagctacaaggtc
tcgggcggtttgcacggcgtgggtgtgtcttgcgtgaacgccttgagcaagtggttgcgc
ctgacggtgcgtcgcgaaggcaaagtgcaccagatcgactttgccaaaggctttgtgcaa
aatcgtttgctcgagacggtggacggcgttgaagtctcgcccatgcgagtgacgggtgcc
accgacaagcgcggcaccgaagtgcatttcttgcctgacgtggaaatcttcacgcagaac
accgatttccattacgagattttggccaagcgtttgcgcgagttgtccttcttgaacaac
ggcgtgcgcatccgcctcaaagacgagcgcagcggcaaagaagacgacttctctggcgca
ggtggcgtcaaaggctttgtggacttcatcaatgccaataaaaaagtgttgcaccccaac
gccttccatgccaacggcgagcgcccagccgacagctacggcggcatccccggcaccagc
atcggtgtggaggtggccatgcagtggaacgacggctacaacgagaacgtgctgtgcttc
accaacaacatcccgcagcgtgacggtggtacccacctgactggcctgcgtgccgcgatg
acccgcgtgatcgcgaagtacatcgagaaaaacgagatcgccaaaaagcaaaaagtcgaa
gtcagcggcgacgacatgcgcgaaggcctgtgctgcgtgttgagcgtgaaagtgcccgag
cccaagttctccagccagaccaaagacaagctggtgtcgagcgaagtgcgtgccccggtg
gaagacatcgtggccaaagccctgaccgactttttggaagagcgccccaacgacgccaag
atcatctgcggcaagattgtggaagccgcccgcgcccgcgaagccgcccgtaaagcccgc
gaaatgacacgccgcaaaggcgtgctcgacggcatgggcctgcccggaaaactggccgac
tgccaagaaaaagacccgtccctgtgcgaaatctacatcgtcgagggagattcggccgga
ggctcggccaagcaaggccgcgaccgcaaattccaagccatcttgcctctgcgcggcaag
atcctgaacgtggaaaaagcccgctatgaaaagctgctcaccagcaacgaaatcgtcaca
ctgatcaccgccttgggcaccggcattggcaaggccagcgccgaatcgggcaagagcggc
accgacgacttcaacgtcgacaaactgcgctaccaccgcatcatcatcatgaccgacgcc
gacgtggacggcgcgcacatccgcactctgctgctgaccttcttctaccgccagatgccc
gacctggtggagcgtggccacatctacatcgcccagccgccactctacaaagtcaaggct
ggcaaagaagagctttacctgaaagacggcccagcgctcgacggcttcttgctgcgcatc
gcgctcaaagacgccagcatcagcacgggcggcgctgcgccgcaagtgctcacaggcgag
acgcttgaagccctggcccgcaaacaccaagtggccgaacacgtcattgcacgcctctcc
aacttcatggacgccgaggccctgcgggccatggccgacggcgtgtcgctcaacctcgac
accttggagcaagctgcggcctgcgcccctgcgcttcaagccaaactgcgcgaactcaac
accaccggcattccggccgaagtgagcgccgagtttgacgtgcgcaccgacaaaccgatt
ctgcgcatcagccgccgccaccacggcaacatcaagagcagcatcatcacgcaagacttt
gtgcacggcgccgactacggggctctggccgaagcggctgagaccttccgcggtttgcta
ggcgaaggtgccaaagccagccgcggtgaaggcgagcgccagaaagaagaaaaagtgggc
gacttccgtcaggccatgcattggctcatcagcgaagccgaacgcaccaccagccgccag
cgctacaaaggcctgggcgagatgaaccccgcccagctgtgggaaaccaccatggacccc
accgtgcgccgcctgctgcgcgtgcagatcgacgacgccatcgaagccgaccgcgtgttc
accatgctcatgggcgacgaagtcgagccacgccgcaacttcatcgaagccaacgcgctg
cgggcgggcaacatcgatatttga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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