KEGG   Listeria ivanovii subsp. ivanovii PAM 55: LIV_2709
Entry
LIV_2709          CDS       T01623                                 
Name
(GenBank) Putative ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
liv  Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:liv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LIV_2709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:liv03019]
    LIV_2709
   03400 DNA repair and recombination proteins [BR:liv03400]
    LIV_2709
Enzymes [BR:liv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LIV_2709
Messenger RNA biogenesis [BR:liv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LIV_2709
DNA repair and recombination proteins [BR:liv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LIV_2709
SSDB
Motif
Pfam: RQC HRDC DEAD Helicase_C RecQ_Zn_bind Helicase_Sgs1 ResIII zf-CXXC
Other DBs
NCBI-ProteinID: CBW87210
UniProt: G2Z9B3
Position
complement(2847605..2849380)
AA seq 591 aa
MIEQAKLILQQNFGYQDFRDGQVDVISKLCAGKDALAIMPTGGGKSLCYQIPALLFDGLT
IVVSPLISLMKDQVDALVSEGIRATFINSTLTTYEIDLRLDAAFSGELKMLYIAPERIET
PGFQRLIEQVPISLFAIDEAHCISQWGHDFRPSYLTLCDSLDKMKKRPLVIALTATATQA
VSDDICRLLKIGQSSVVKTGFSRDNLFFQVVKGQDKDKYLMEYLTKNKTESGIVYASTRK
EVERLHAFLLKKGVESGMYHGGMSDLARQDWQEKFLYDDIRVIVATNAFGMGINKSNVRF
VIHYNIPRNIEAYYQEAGRAGRDGVPSDCILLFSPQDSRIQQFLIEQSELDEERKQNEFA
KLRQMTGYGYTEICLQKYIVQYFGDDEEDCGKCSNCLDTRESTDVTILAQQVFSCIKRMG
ERFGKVLIAKVLTGSADQKVKEWRFDELSTYGLMKEASQKDVLQLIDYLIAEKYLQPTDS
QFPALKLTERAVSVLRGELKVERKQAKRAEKVKIEVNSDLFEQLREVRRELASKHKVPPY
IIFSDETLREMCAYLPQDEEALLEIKGIGAMKRDKYGAEFLAVLQQEAVKE
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgatagagcaagcaaaacttattttacaacagaattttggttatcaagattttcgggat
ggtcaagtggatgtcatttccaaactttgcgcgggaaaagatgctcttgcaattatgcca
actggcggcggaaagtcactttgttatcaaatcccagcacttctttttgatggactaacg
attgttgtttcgccacttatttcactaatgaaggatcaagtcgatgcgctggtttctgaa
gggattcgagccacttttataaatagtacactaactacttacgaaatcgatcttcgttta
gacgccgctttttcaggtgagctaaagatgctctatattgcgccagaacggattgaaaca
ccaggttttcagcgtttaatcgaacaagtaccaatttccttgttcgcgattgatgaagcg
cactgtatttcgcagtggggacatgattttagaccaagctacttaacgctttgtgatagt
ttagataaaatgaaaaaaagaccacttgttatcgcactaacagcaactgcaactcaagct
gtttcggatgatatttgccggttgttaaaaatcgggcaaagttcagtcgtgaaaacaggt
ttttcgagagataatttattctttcaagtagttaagggtcaagacaaagataagtatttg
atggaatatttaacaaaaaacaaaaccgagtcaggaattgtctatgcttcaacacggaaa
gaagtagagcggctccatgctttcttgctaaaaaaaggcgtcgaatccggcatgtatcac
ggaggaatgagcgatttagcaaggcaagattggcaagagaagttcctatatgatgatatt
cgcgtaatcgttgccacaaacgcatttggaatgggaattaataagtctaacgtgcgcttt
gttattcactataacattccacgaaatatcgaggcatattaccaagaagcaggacgggct
gggcgagacggggttccgagtgattgtatcttgcttttctctccacaagatagccggatt
cagcagtttttaatcgaacaatctgagctagacgaagagcggaaacagaacgaatttgcc
aagctacgccaaatgacgggctacggctatacagaaatctgcttgcaaaagtatatcgtt
caatattttggtgatgatgaggaggattgcgggaagtgtagcaactgtttagatacaaga
gaatccactgatgtaacgattttagcacagcaagtattttcctgtattaagcggatggga
gagcgctttggaaaagttctaattgccaaagtattgaccggttcagctgatcagaaagta
aaagagtggcgatttgacgaactgagtacctatgggttaatgaaagaagcctcccaaaaa
gatgttctgcaactgattgattacctcatcgctgaaaaatatttacaaccaaccgatagc
cagtttcccgcgttaaaattaacggagcgagcagtatctgtgttacgcggtgaattaaaa
gtcgaacgaaaacaagcaaaacgagcagaaaaagtgaaaatagaagtaaatagcgactta
ttcgaacaactccgggaagtacggagagaattagcttccaaacataaagtgcccccatat
atcattttctctgacgaaactttacgagaaatgtgcgcttacttgccacaagacgaagag
gcgcttttagaaattaaaggtattggtgcaatgaagcgtgataaatacggggcagaattc
ttggctgttttacaacaagaggcagtgaaagaataa

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