KEGG   Lotus japonicus: Lj1g3v3975970.1
Entry
Lj1g3v3975970.1   CDS       T04348                                 
Symbol
Lj1g3v3975970.1
Name
(Kazusa) -
  KO
K12857  Prp8 binding protein
Organism
lja  Lotus japonicus
Pathway
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Lj1g3v3975970.1 (Lj1g3v3975970.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lja03041]
    Lj1g3v3975970.1 (Lj1g3v3975970.1)
Spliceosome [BR:lja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    Lj1g3v3975970.1 (Lj1g3v3975970.1)
 Complex C
   U5 SnRNP specific factors
    Lj1g3v3975970.1 (Lj1g3v3975970.1)
SSDB
Motif
Pfam: WD40 NBCH_WD40 ANAPC4_WD40 eIF2A Nup160 Nbas_N PALB2_WD40 DUF5074
AA seq 345 aa
MQAFPGEGGSALSVVGPRPMEWSTVPYSGPQGPGSNGKQRTSSLESPIMLLTGHQSVIYT
MKFNPAGTVIASGSHDREIFLWNVHGECKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK
TVRVWDVETGKQVKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP
DKYQITAVGFADASDKIFTGGIDNDVKVWDLRKGEVIMTLQGHQDMITGMQLSPDGSYLL
TNAMDCKLCIWDMRPYAPQNRCVKVFEGHQHNFEKNLLKCSWSPDGSKVTAGSADRMVYI
WDTTSRRILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI
NT seq 1039 nt   +upstreamnt  +downstreamnt
atgcaagcttttcctggtgaaggtggaagtgctttgtcagttgtcggtccaaggcctatg
gaatggtctactgttccatatagtggtcctcagggtcctgggtcaaatggaaagcagcgg
acctcaagtttggaatcgccaatcatgttgctgacaggtcaccagagtgttatatatacc
atgaagttcaacccagcaggaacagtcattgcatctggatcgcatgacagagaaattttc
ctctggaatgtgcatggggaatgcaagaacttcatggttctaaaaggtcacaagaatgca
gttttagatcttcactggactacagatgggacacagatagtctctgccagccctgataaa
acagtgagggtatgggatgtggaaacaggaaaacaagtcaagaagatggtagagcatctc
tcatacgtgaattcttgttgtccttccaggagggggccacctcttgttgtcagcggctct
gatgatggaactgcaaaattgtgggacatgcgtcaaaggggttccatccaaacattccca
gataaataccagattacggctgtcggcttcgctgatgcttcagataagatcttcaccggt
ggtattgataatgatgtcaaagtatgggatttgcgtaaaggtgaggttatcatgacactt
caaggtcaccaagacatgatcaccggaatgcaactgagtcctgatggttcctatcttcta
acaaacgctatggactgcaagctttgcatttgggatatgcgcccatatgctccccagaat
cgctgtgtgaaggtgtttgaagggcaccaacacaattttgaaaagaacttgttgaaatgt
agctggtcacctgatggaagcaaggtcacagctggtagtgctgatagaatggtttacatc
tgggacaccacttctcggcgcatcttgtataagctccctgggcataatggatctgttaat
gaatgtgtttttcatcccaatgaacctattgttggatcttgcagtagtgacaagcagatt
tatctgggggagatatgaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (14)   

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