KEGG   Lotus japonicus: Lj3g3v2613490.2
Entry
Lj3g3v2613490.2   CDS       T04348                                 
Symbol
Lj3g3v2613490.2
Name
(Kazusa) -
  KO
K03126  transcription initiation factor TFIID subunit 12
Organism
lja  Lotus japonicus
Pathway
lja03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Lj3g3v2613490.2 (Lj3g3v2613490.2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lja03021]
    Lj3g3v2613490.2 (Lj3g3v2613490.2)
   03036 Chromosome and associated proteins [BR:lja03036]
    Lj3g3v2613490.2 (Lj3g3v2613490.2)
Transcription machinery [BR:lja03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     Lj3g3v2613490.2 (Lj3g3v2613490.2)
   Coactivators
    SAGA/TFTC/STAGA complex
     Lj3g3v2613490.2 (Lj3g3v2613490.2)
Chromosome and associated proteins [BR:lja03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     Lj3g3v2613490.2 (Lj3g3v2613490.2)
    STAGA complex
     Lj3g3v2613490.2 (Lj3g3v2613490.2)
    TFTC complex
     Lj3g3v2613490.2 (Lj3g3v2613490.2)
    SAGA complex
     Lj3g3v2613490.2 (Lj3g3v2613490.2)
    SLIK complex
     Lj3g3v2613490.2 (Lj3g3v2613490.2)
SSDB
Motif
Pfam: TFIID_20kDa Histone CBFD_NFYB_HMF
AA seq 426 aa
MSPPFNSTKRFNARLPCRASTKFNRSSSSSSSVXAQQQQLGGGANLSRSLMGQSSHFPML
SGAGAQFSLLSSPRQKGGLVQSSQFSSANSAGQPLQNMQAIGMMGSPNLSSQLRAAGALA
YAQQLRMTPGQIRQQLSQQSSLNGQQVQGLPRSSSLAFVNSQLSGLSQNGQPAMVHNSLT
QQQWMKQMPPMTGPASPLRLQQHQRQQQLASSTQLPQSSMTLSPQQLSQVMQQQKSMAQP
QLHQQQQQPPQQQQQLIQQQPQQQSQLQASVHQQQQQQSPRIPGPTGQKTLSLTGSQPDA
TASGTTTPGGSSSQGTETTNQVLGKRKIQDLVAQVDPQGKLDPEVTDLLLELADDFIDSA
TTHGCVLAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEEKKYQSKPLNDLHKKRLEMVS
LKDSRE
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgtctccacctttcaactccaccaaacgcttcaacgctcgccttccatgtcgcgcctca
accaaattcaaccgcagcagcagcagcagcagttcagtgnnngctcagcagcagcaatta
ggcggcggcgccaatctgtcgcggtcgttgatggggcagagcagccacttccccatgtta
tccggtgccggagcacagtttagcctattgtcctcgccgaggcagaaaggtgggctagtc
cagtcctctcaattctcttcggctaattctgccggacaaccactgcaaaatatgcaagcg
attgggatgatggggtcgccgaatctcagctcccaactaagagccgctggagcccttgct
tatgctcagcagctccggatgactccgggccaaataaggcagcaactatcacagcagagt
tcgcttaatgggcagcaggttcaaggtttaccaaggtcgtcgtcccttgcttttgtgaat
tcccagttgtctgggttgtctcaaaacggacagcctgcaatggttcataattctttaaca
caacaacagtggatgaagcaaatgccaccaatgactggccctgcttcaccattacgtctt
caacaacatcagaggcagcagcagctggcttcatctactcaacttccacaaagctctatg
accctgagcccacagcagttgtcccaggtgatgcagcaacagaaatcaatggcacagcct
cagctgcatcagcagcagcagcagccgcctcagcagcagcaacaacttatacaacagcag
ccacaacaacaatctcaactacaagcatctgttcatcaacaacaacaacagcaatccccg
aggataccagggcccacaggccaaaaaacacttagtttaacaggatcgcagccagatgct
actgcatctggaactactacaccagggggaagttcaagccaaggaactgaaacaacaaac
caagtcctcgggaaaagaaagatacaggatttagttgcacaggtggatccacagggtaaa
ctggaccctgaagttacagatcttcttttagagcttgctgatgacttcattgattctgca
actacacatggttgcgttttggcgaaacatagaaaatcatcaacattggagtccaaggat
ttattgctacacttagaaaagaattgggatctcacaattccaggatattcaagtgaagag
aagaagtaccagagcaaacctttaaatgacctccacaagaagcgcctagaaatggtaagt
ttaaaggattcacgcgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (10)   

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