KEGG   Lotus japonicus: Lj6g3v0647600.1
Entry
Lj6g3v0647600.1   CDS       T04348                                 
Symbol
Lj6g3v0647600.1
Name
(Kazusa) -
  KO
K12880  THO complex subunit 3
Organism
lja  Lotus japonicus
Pathway
lja03013  Nucleocytoplasmic transport
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Lj6g3v0647600.1 (Lj6g3v0647600.1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    Lj6g3v0647600.1 (Lj6g3v0647600.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj6g3v0647600.1 (Lj6g3v0647600.1)
   03041 Spliceosome [BR:lja03041]
    Lj6g3v0647600.1 (Lj6g3v0647600.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     Lj6g3v0647600.1 (Lj6g3v0647600.1)
Spliceosome [BR:lja03041]
 Complex C
  Other components
   EJC/TREX
    Lj6g3v0647600.1 (Lj6g3v0647600.1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Lj6g3v0647600.1 (Lj6g3v0647600.1)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 eIF2A NBCH_WD40 Nup160 MMS1_N PROPPIN WDR93
AA seq 331 aa
MEEQTPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHKRKFNYEVLTSFKFKPIHKRKFNYEVNEIAWNMTGEM
FFLTTGNGTVEVLTYPSLRPLETLMAHTAGCYCIAIDPTGRYFAVGSADSLVSLWDISQM
LCVRTFTKLEWPVRTISFNHTGELIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWN
PKYNLLAYAGDDKNKYQADEGVFRIFGFENA
NT seq 999 nt   +upstreamnt  +downstreamnt
atggaggaacaaaccccatttaagaatctccatagcagagagtattctggtcacaagaag
aaggtgcactctgtggcctggaattgcattgggaccaaacttgcctctgggtctgtggat
caaactgctcgaatctggcatgttgagcaacatgggcatggtaaagtcaaagatattgaa
ttaaaaggccacactgatagtgtggatcagctatgctgggatcccaaacatgccgatctg
attgcgactgcatcgggtgacaagaccgttcgtttgtgggatgctcgtagtggaaaatgc
tcacaacaggcagaacttagtggggagaatatcaacattacctacaaacctgatgggact
catgtagctgtgggcaatagggatgatgaattaacaatactggatgttaggaagttcaaa
ccaattcataagcgcaaattcaactatgaggtattaactagttttaagttcaaaccaatt
cataagcgcaaattcaactatgaggtaaatgagattgcttggaacatgacaggcgagatg
ttctttctaactacaggaaatgggactgtggaagtactgacttacccatctcttcgacct
cttgaaaccctcatggctcatacagccggttgttattgcattgcaattgacccaacagga
agatattttgctgttggaagtgctgattcccttgtcagcctgtgggatatctcacagatg
ctctgtgtgcgcacctttacaaagctggaatggcctgtccgtacaatcagtttcaatcat
actggggaacttattgcttcagcaagtgaagacttgttcattgatatttctaatgttcaa
actggacgaacagtgcatcagattccttgtagagctgccatgaacagcgttgagtggaat
cctaaatacaatttacttgcatatgctggtgatgacaaaaacaagtatcaggctgatgaa
ggtgtttttcgaattttcggttttgaaaatgcttagcat

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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