KEGG   Lactobacillus johnsonii DPC 6026: LJP_1165c
Entry
LJP_1165c         CDS       T01960                                 
Name
(GenBank) exonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ljh  Lactobacillus johnsonii DPC 6026
Pathway
ljh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ljh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LJP_1165c
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ljh03400]
    LJP_1165c
Enzymes [BR:ljh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LJP_1165c
DNA repair and recombination proteins [BR:ljh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LJP_1165c
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 UvrD_C_2 SH3_13 AAA_11 Viral_helicase1 UvrD_C UvrD-helicase AAA_22 RsgA_GTPase T2SSE DEAD MCM4_WHD NTPase_1 IMS_HHH AAA_29 AAA_12 AAA_28 AAA_5 DUF1002 nSTAND3
Other DBs
NCBI-ProteinID: AEB93487
Position
complement(1259368..1261743)
AA seq 791 aa
MAETSFTGRINGIVFENNQDLFKIIDVDLISKLPDYDRDNIRVTGNFGDIQIGSTYKFTG
NIVVHEKFGKQFRIRSYEPVLPHEEGSLAKYLSSDKFPGIGKRAAEKIIDSLGTNALDLI
KSNQTEIDNLDLTQKQKDSLLSGINQMDSFSEIVIKLARYGINKKVAGNIYKVYHGDSLK
KLEEDPYQALGEVRGFGFKTADNMGHALGIELNDPRRVRGALLSILQTALNTLGDTYVAL
DELLTQAYDLVQSTSYDELANSVNELQRQGKVVVSGDKAALQTIFQTELDIATELKHVVN
NQVEKEEFDDSDIEKAIKHVEETLEIEYDDTQKNAIKNALNNPISILTGGPGTGKTTIIN
GILMCLKELAEIPSAALYSDDPPFLLAAPTGRAAKRMSEVTDISAKTIHRLLGLGIGENE
ATDVNELNGEILIIDEMSMVDMFLFKQLLSGINSTKRIVFVGDKDQLPSVGAGNVFSDLI
SSGAFPTTKLQVIHRQGEDSSIIKLAHAINDEEAEETIFNKTKNYSFIPCQPSLVGDAID
QIVNLAIKRGFKKDDVQVLGAMYNGQGGITHLNDILQDVMNPLSAKTKVIEAHNESFRIG
DRILQLQNNPEKDIYNGQIGKIIGLNPDDKAKILIADFDGREIEFGIKDLNDITRAYAIT
IHKSQGSEFPLVILNLTMQNYMMLRRNLLYTAITRAEKNLVMVGEKKAYIMALRTPGNDR
KTELAAKIRYELGLKEVENTSNVNAEQEKTKTEVKEENVEPEDYILTPELIYSGQIDPMI
GMEDIKLEEKR
NT seq 2376 nt   +upstreamnt  +downstreamnt
atggcagaaactagttttactggacgaataaatggaattgtttttgaaaacaatcaagat
cttttcaagattattgatgtagatttaatcagtaaattacctgattacgatcgtgataat
atccgagtaactggaaattttggggatatccaaattggatcaacttataaatttaccggt
aatattgtcgtgcacgaaaaatttggtaaacaatttcgtataaggtcttatgaaccagtt
ttgcctcatgaagagggtagtttagctaaataccttagttctgataagtttcctggaatc
ggtaagagggctgctgaaaagatcattgatagtttaggaacaaatgcgttagatttgatt
aagtcaaatcaaactgaaattgacaatcttgatttgacccaaaagcaaaaggatagctta
ttatctggaattaatcagatggattctttttcagagattgtgattaagctggctagatat
gggattaataaaaaagtagccggtaatatttataaagtgtatcatggtgattccttgaag
aaactagaggaagatccttatcaagcccttggtgaagttcgcggctttgggtttaaaact
gcggataatatgggacacgcgctcggaatagaactaaatgatcctagaagagttagggga
gcacttctaagtattttacagactgctcttaataccttgggagatacttatgttgcactt
gatgaattattaacacaggcttatgatttagttcaatctacctcttatgatgagcttgct
aatagtgttaatgaacttcaaaggcaaggaaaagttgttgtttcaggtgataaggcagct
ttgcagacaatttttcaaactgaacttgatatagccactgaattaaaacatgtagttaat
aatcaagtcgaaaaagaagaatttgatgatagcgatattgaaaaagcaataaagcatgtc
gaagaaacacttgaaattgaatatgatgatactcaaaaaaatgcaattaaaaatgcgtta
aataatccaatttcaattcttactggtggtcctggtactggtaaaacgacaattatcaat
ggaattttaatgtgcttaaaggaacttgcggaaattccaagtgcagctttgtatagcgat
gatccaccatttttacttgctgcaccaacgggtcgagctgccaagcgaatgagtgaggtt
acagatatttcagcgaaaaccattcaccgtttattagggttaggcatcggtgaaaatgaa
gcgactgatgtaaacgaattaaacggtgagatcttaattattgacgaaatgtcgatggtt
gatatgtttctctttaaacagcttttatccggtattaattcaacaaagaggatagttttt
gttggggacaaagaccagcttccttcagttggagcagggaatgtttttagtgatttaata
agttcaggggcatttccaactacaaagttgcaagtaattcatagacagggagaagactcc
tcaattattaagttggcccatgcaattaatgatgaagaagcagaagagactatttttaat
aaaactaaaaattactcctttattccatgtcaaccaagcttggtgggggatgcaatcgat
caaatcgtaaatttggctattaaacgtggtttcaaaaaggatgatgttcaagttctggga
gcaatgtacaatggtcaaggtggaattactcacttgaatgatattttgcaggatgtgatg
aatccactgtcggcaaaaactaaagtaattgaagctcacaatgaaagttttagaatcggg
gaccgaatcctacaattacaaaataatccagaaaaagatatttataatggtcaaattggt
aaaattattggccttaatcctgatgataaagccaaaatattaattgctgattttgacggt
cgtgaaatagaatttggtattaaagacttaaatgatattacccgtgcgtatgccattact
atccataagtcccaaggatcagaatttccgttagtaattttaaatcttacgatgcaaaat
tatatgatgttgaggcggaatttgttatataccgccattactcgtgccgaaaaaaactta
gttatggtaggagaaaaaaaggcgtatatcatggcattgcgtactccaggtaatgaccgt
aagactgagttagcagctaaaattaggtacgaactaggtcttaaagaagttgaaaatact
tcaaatgtaaatgcggaacaagagaaaactaaaactgaagttaaagaagaaaatgttgag
ccagaagattatattttgactcctgagctaatttattctggacagattgatccaatgatt
ggaatggaagatattaaattggaagaaaaaagatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (22)   
   Pfam (22)   
All databases (31)   

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