KEGG   Lactococcus lactis subsp. lactis IO-1: lilo_1791
Entry
lilo_1791         CDS       T02485                                 
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lls  Lactococcus lactis subsp. lactis IO-1
Pathway
lls03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lls00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    lilo_1791 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lls03019]
    lilo_1791 (recQ)
   03400 DNA repair and recombination proteins [BR:lls03400]
    lilo_1791 (recQ)
Enzymes [BR:lls01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     lilo_1791 (recQ)
Messenger RNA biogenesis [BR:lls03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     lilo_1791 (recQ)
DNA repair and recombination proteins [BR:lls03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      lilo_1791 (recQ)
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII Helicase_Sgs1 MC4
Other DBs
NCBI-ProteinID: BAL51788
Position
1949688..1951466
AA seq 592 aa
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLV
ISPLISLMKDQVDQLNIAGIPATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDY
FNVFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQYLPTNPTVLALTATATPKVA
DDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKAVRYHAGLSEQERQMNQELFLFDEVPIMVATNAFGMGINKPNVRFV
IHYALPATIESYYQEAGRAGRDGLESDAILLFSPNDLRIRNFLIEQSEGDEAHKEHEYEK
LRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERELLDITIDAQKVLSCVVRMGE
RFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAEGYLNITSGK
FPLLLLSAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVP
PFMIFSDSALKEMAQVLPDSPSQFLQISGVGPVKLEKYGRLFIDKISEYKKS
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgaatttagaagctaaattaaaagaaatttttggttatgacaatttccgaaatggtcag
aaacaaattattgaacaagtcctagatggacaagccactcttggtattttacccacagga
gctggaaaatcaatctgctatcagttaccagctcttattcaaccagggcttactctcgta
atctccccacttattagcttgatgaaagatcaagtcgaccagctgaatattgccggaatt
ccagcaacatttattaactctaccttagaggattccgaatcttatcaaagaatgcgacag
gttgaaaatggcgaaatcaagcttctttttgtagcaccagagcgtttttcattagactat
ttcaatgtctttttacaaaaacttccaattgatttagttgccatagacgaagcacactgc
atttcacaatgggggcacgatttcagacccagttatgtcgattttgcctctcatctccaa
tatttaccaacaaatcctaccgtcttagcccttacggccactgcgacaccaaaagttgca
gatgatattcaaaaacttctttcaatttcccccagtcatactattaaaaccggttttctt
agagaaaacttacgttttgaagtagtcaaagggatggataagagaacttttcttaaaaat
tatcttaaaaatcaagaaagtgaggctgctggaattatctatgccagcactcgtaaagaa
gttgaagaaatttgtgaatggctcaaccataatcatttcaaagccgttcgttaccatgct
ggactgagtgaacaggaacgtcaaatgaatcaagaactttttctctttgacgaagtgcca
ataatggttgccactaatgcttttggcatgggaatcaataaaccaaatgttcgatttgtg
attcattatgcccttcccgcaacaattgaaagttattatcaagaagctggacgagcagga
cgggatgggcttgaatctgatgctatcctccttttttcaccaaatgatttacgaattcgt
aatttcttgattgagcaaagtgaaggtgatgaagcgcacaaggaacatgaatacgaaaag
cttcgacaaatgcaagcatacacaagtgccgaaacctgtttacaacgctatatcttgcaa
tattttggtgatgaaggtgaagattgtaaaaaatgtagtaattgtcttgatgaaagagaa
cttctcgatattacaattgatgctcaaaaagttctatcttgtgtcgtccgaatgggtgaa
cgttttggtaagacggccgtagcacaagttttgattggttctaaaaataaaaatattgca
aaatggaattttgaatctctatcgacttttggaattatgaaaaaccattcccaaaagacc
gtaggtgaattaatcgattttctatctgctgaaggttatttaaacattacatcaggtaaa
ttcccacttctccttctttcagcccaaggattaaaagtcctcaaaggacaaatcaaagtt
tatcgcaaagctagcttaattattgaatcgaaaacaaaaatttctcatcattttgatgaa
gaatgttttgcaagtattcgtgcacttcgacttgaactagccaaggaagaaggcgtccct
cctttcatgattttttctgatagtgcccttaaagaaatggctcaagttctgccagatagc
ccaagtcaatttttacaaatttctggtgtcggacctgttaaactcgaaaaatatggaagg
ctttttatcgacaaaatatctgaatataaaaaaagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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