KEGG   Lactococcus lactis subsp. lactis CV56: CVCAS_0014
Entry
CVCAS_0014        CDS       T01964                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
llt  Lactococcus lactis subsp. lactis CV56
Pathway
llt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:llt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CVCAS_0014 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:llt03400]
    CVCAS_0014 (mfd)
Enzymes [BR:llt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CVCAS_0014 (mfd)
DNA repair and recombination proteins [BR:llt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CVCAS_0014 (mfd)
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF Helicase_C CarD_TRCF_RID ResIII AAA_16 AAA_7 UB2H RecG_dom3_C Sulfotransfer_4
Other DBs
NCBI-ProteinID: ADZ62682
Position
17158..20643
AA seq 1161 aa
MNIIEFFDQNWQLQKWQQGFSKRERTLLTGLSGTAKSLVMANAYENVADKYIIVTDSQFH
ANELYDELSTLLGEEKVFQFFSDDNIYAEFALASKDRVAYRLEALNFLLDEKSTGFLVIP
FLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEFSMRGDIV
DIYPLDAENPVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTDKEFDKGAK
SLTEMTNLLTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYFYDKKTSLLNYFPKNVQIFI
DDFQKVNEMNNKLEMELADFILSEKAMERGFEGQTYLLDTMAKVRNYKPATFFSNFQKGL
GNLRFEQLYNFKQHSMQQFFGQLELFYTEVERFIKQEFTVVLAVSSEKLRKSLHELDLSL
QEVDRESIQVGKVNLIDLQLSNGFNFLDEKLVVMTEHEIFGKMRKKKARKLNITNAERLK
DYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGDTISVPVDHLDLLSKY
TAGEGKSPKINKLNDGRWRKTMSYVSKQVEDISDDLIKLYAERQAKKGFAFSPDDTSQEE
FDSGFSYVETEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQV
AVLVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHR
LLSKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRD
LSVIETPPTNRYPVQTYVMETNYGVVRDAVLREISRGGQVYYVYNRVDTIEQKVSQLEEL
IPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENADMMG
LSQLYQLRGRVGRSNRVAYAYLMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSI
RGAGNLLGSEQSGFIDSVGFDLYSQLLEEAIHAKLGTSKQKRTSNVEIFLELDAFIPAYY
ISDERQKIEIYKRIRQIDSREIYEELQEELVDRFGEYPDEVAYLLEIGLLKHFADNALVE
KIEKSRFEATVTLEKVANTTYDPQDYFKALAKTSMKASVGEKYGKMTFRFKIENRNSVVL
LSEIMNFIEELSKIRDSYENK
NT seq 3486 nt   +upstreamnt  +downstreamnt
atgaatattattgaattttttgaccaaaattggcaactacaaaaatggcaacaaggtttt
tcaaagcgtgagcgaactttactgacaggattgtcaggaacagcaaagagcttagtgatg
gcaaatgcttatgaaaatgttgctgacaaatatattattgttactgacagccagtttcat
gcgaatgaactttatgatgaactgtcaactttgcttggtgaagaaaaagtttttcaattt
ttttctgacgataacatctacgcagagttcgcacttgcatctaaagatcgagttgcttat
cgacttgaggcacttaatttcctacttgacgaaaagtcaacaggatttttggtcatacct
tttttggcattacggagctatttaccaagtcccgaaaattttttagaaaattatctttta
ctgacctctggggatgagtatgatttatcaaatttagttaatttattatcaaaagctggt
tatgaaaagacacagcgcgtgatgacgccaggtgaattttcaatgcgaggagatatcgtt
gatatttatcctttagatgcggaaaatccggtacgtttagagttttttggtgatgaagta
gatacgattcgctcatttgatgtggagagtcaacgttcactgacaagccttgaacgtttg
gaaatatatccggcaagtgattttattttgactgacaaagaatttgacaagggtgcaaaa
tcactgacagaaatgacaaatttactgacagacccgtcagcaaaatcatatatggaagaa
gtgatttcagcagctcaaaatcactactatcacaaagatttacgaaaatttgcggagtat
ttttatgataaaaaaacttcacttttaaattattttccaaaaaatgttcaaatattcatt
gatgattttcaaaaagtaaatgaaatgaataataagttagaaatggaattagcagatttc
attttatctgaaaaagcaatggaaagaggatttgaagggcagacttatttgctagataca
atggcaaaagttagaaattataagcctgctaccttcttttcaaatttccaaaaagggctc
ggaaatctcagatttgaacaactttataatttcaaacaacattcaatgcaacaatttttc
ggtcaattagaacttttttacactgaagttgaacgatttattaagcaagagtttacagtt
gttttagctgtatcatcagaaaaactccgtaaatcactccatgaattagatttaagttta
caagaggttgacagagaatctattcaagtgggtaaagtcaatctgattgatttgcaatta
tccaatggttttaatttcctcgatgaaaaattagtcgtcatgactgagcatgaaatattt
ggtaaaatgcgtaagaaaaaggcacgcaaactgaatattacaaatgcagaaaggctaaaa
gattacaatgaactcgctgttggtgattttgttgtccataagaatcatgggattgggaaa
tatttaggtttacaaacgcttgaagtcggcggaatgcatcgtgattatctgaccattcaa
tatcaaaatggggatacaatttctgttccagttgatcacctagatttactcagtaaatat
acagctggtgaaggaaaaagtcctaaaatcaataaactgaacgatgggcgttggcgtaaa
accatgtcttatgtcagtaaacaagttgaagatatttcagatgatttgattaaactttat
gctgaacgtcaggcgaaaaaaggatttgcattctcgccggatgacaccagtcaagaagaa
tttgattctggtttttcatatgttgaaactgaagaccagatgcgttcaatcaatgaaatt
aagcatgatatggaacttgaacggccaatggaccgcttgttagttggtgatgttggtttt
ggtaaaaccgaagttgcaatgcgagcagccttcaaagccataaatgacgggaaacaagtc
gcagttcttgtgccaacgactgttcttgctgagcagcattttaataattttactgaacgt
tttatcaactttggtgtaaatgtcgaagttctcagccgttttcaaacgaaaacacagcaa
actgaaattctagccaaattgaaaaaaggacgagttgatttaattattggaactcaccgt
ttactttcaaaagatgttgaattttttgatttaggtttgatgattattgatgaagaacaa
cgttttggggttaagcataaagaacgtttgaaagaattaaaaacccaggttgatgttttg
acattgacagccacacctattcctaggactctacatatgtcaatgcttggaattcgtgat
ttgtcagttattgaaacaccaccaacaaaccgttatccagttcaaacctatgtcatggaa
acaaactacggtgtggttcgtgatgcagtgttgagagaaatctctcgtggtggacaagtt
tactatgtttacaacagagttgacacgattgagcaaaaagtttctcaattagaagaatta
attcctgaagcaagaattggttttatacacggccaaatgactgaagtacaacttgaaaat
actttacttgcctttatcgcaggtgattatgatgtgcttgttgcaacgacaatcattgaa
actggggttgatattccaaatgcgaatacgctttttattgaaaatgcggatatgatgggc
ttgtcacaactttatcaattaagagggcgagtggggcgttcaaatcgggtggcttacgcc
tatttaatgtatcgacctgaaaaaatattgtctgaagtttcggaaaaacgtttggaagct
attaaaggctttacagaattaggctcaggtttcaagattgccatgcgtgatttgtctatc
cgtggtgctggtaatttactgggaagtgagcaatcaggatttattgattctgttggtttc
gatttgtactcacaactgttggaagaagccattcacgctaaacttgggacaagtaagcaa
aaacggacttcaaatgtggaaatttttttggaattggatgcctttattcctgcttattat
atttctgatgaacgtcaaaaaattgaaatttacaaacgaattcgtcaaattgatagtcgg
gagatttatgaagaactacaagaagaattggttgaccgttttggagaatatccagatgaa
gtcgcttatcttctggaaattggtctcttaaaacactttgcagataatgccttagttgaa
aaaattgaaaaatcgagatttgaagcaactgttactttggaaaaagtggctaataccacc
tatgacccacaagattatttcaaagccttggctaaaacaagcatgaaagcttctgtgggg
gaaaaatatggtaaaatgactttccgctttaaaattgaaaatcgaaactccgttgttctt
ttgagcgaaataatgaattttattgaagaattatcaaaaatacgagacagttacgaaaac
aagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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