KEGG   Leisingera methylohalidivorans: METH_00990
Entry
METH_00990        CDS       T02961                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lmd  Leisingera methylohalidivorans
Pathway
lmd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lmd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    METH_00990 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lmd03021]
    METH_00990 (rpoB)
   03400 DNA repair and recombination proteins [BR:lmd03400]
    METH_00990 (rpoB)
Enzymes [BR:lmd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     METH_00990 (rpoB)
Transcription machinery [BR:lmd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     METH_00990 (rpoB)
DNA repair and recombination proteins [BR:lmd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      METH_00990 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: AHC99463
UniProt: V9VP42
Position
179023..183156
AA seq 1377 aa
MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDEAEPLDGEGIKGVFQSV
FPIKDFNETSVLEFVKYAFEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQDAIMGAYYNTVQFKLEK
SRGWVTPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTPRAVKKMIEEGTITELLVPFE
HIVGKYVSQDIINEENGAIYVEAGDELTLEYDKDGELIGGSLKELMDAGITDIPVLDIDN
VNVGPYMRNTMAQDKNRTRESALMDIYRVMRPGEPPTVEAASALFDTLFFDGERYDLSAV
GRVKMNMRLALDAEDTQRTLRKEDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVNEGQVTDEVHYMSATEEMRHTVAQANATLDEGGKFINDLVSTRQSG
DYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEKVAIDSGAAIQAKRAGIIDQVDAQRIVIRATSDLELGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGDTVTKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELAILDRNIYARLRGMILGKVAVKGPKGVRAGAEITEEL
LDSLSRGQWWMLALEDEKDAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGIKVDDALQEYRRSGDLTPVRDAMHHAYGDDVYDEGIASMSEAA
LVEAAGNVSRGVPIATPVFDGAKEDDVNDALVRAGFDQSGQSILFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEE
NT seq 4134 nt   +upstreamnt  +downstreamnt
atggctcaatcgttccttggccagaaacgtctacgcaaatactacggcaaaatccgcgaa
gtgctggagatgccgaacctcattgaggtgcagaaatcttcctacgaccttttcctgcgc
tctggcgatgaagccgagccgctggacggcgaaggcatcaaaggtgtgttccagtcggtt
ttcccgattaaggatttcaacgaaacctccgttctggagttcgtgaagtacgcgtttgaa
aagccgaagtacgacgtcgaagagtgcatgcagcgcgacatgacctacagcgcgccgctg
aaggtcaccctgcgcctgatcgtctttgatgtggacgaagacaccggcgccaagtcggtc
aaggatatcaaagaacaggatgtcttcatgggcgacatgcccctgatgaccccgaacggc
acctttgtcgtcaacggcaccgagcgcgtgatcgtgtcccagatgcaccgctcgccgggc
gtcttcttcgaccacgacaaaggcaagacccactcctcgggcaagctgctgtttgcctgc
cgcatcatcccgtaccgcggctcctggctcgacttcgaattcgacgccaaggacatcgtc
tttgcccgtatcgaccgccgccggaaactgccggtgaccaccctgctgtacgccctgggc
ctggaccaggacgccatcatgggcgcctattacaacaccgttcagttcaagcttgaaaag
tcccgcggctgggtcaccccgttcttcccggaacgtgtgcgcggcacccgcccgacctat
gacctggttgacgcggccaccggcgagatcatctgcgaggccggcaagaaagtcaccccg
cgcgccgtcaagaagatgatcgaagaaggcaccatcaccgagcttctggtgccctttgag
catatcgtcggcaaatatgtctcccaggacatcatcaacgaagaaaacggcgcaatctac
gtcgaagccggtgatgagctgaccctggaatacgacaaggacggcgaactgatcggcggc
tctctgaaggagctgatggatgccggcatcaccgatattccggtgctggacatcgacaac
gtcaacgtcggcccctacatgcgcaataccatggcgcaggataagaaccggacccgcgaa
agcgcgctcatggacatctaccgtgtgatgcgcccgggcgagccgcccaccgtcgaggcc
gcgtcggccctgttcgacaccctgttcttcgatggcgagcgttacgacctgtccgcggtt
ggccgtgtgaagatgaacatgcgcctggcgctggacgccgaggacacccagcgcaccctg
cgcaaggaagacatcgtcgcctgtatcaaggcgctggtcgacctgcgggacggccgcggc
gacatcgacgacatcgaccacctcggcaaccgccgggtgcgctcggtcggcgagctgatg
gaaaaccagtaccgtgtcggcctgttgcgcatggagcgcgcgatcaaggaacgtatgtcc
tcggtcgagatcgacaccgtgatgccgcaggatctgatcaacgcgaaaccggcggctgcc
gcggtgcgtgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaaacgccgcctttcggcgcttggccccggcggtctgacccgc
gagcgtgcaggctttgaagtccgcgacgttcacccgacccactatggccggatgtgcccg
attgaaacgcctgaaggcccgaacatcggtctgatcaactcgctggccacttttgcacgc
gtcaacaaatacggcttcatcgaaacgccttaccgcgttgtcaacgaaggccaggtgacc
gacgaagtgcactacatgtcagcgaccgaggaaatgcgccacaccgtggcgcaggccaac
gcgaccctggacgaaggcggcaagttcatcaacgatctggtgtcgacccgtcagtccggc
gactacaccctggcgccgcgcgaaagcgtggacctgatcgacgtcagcccgaaacagctg
gtctcggttgcggcctcgctgatcccgttcctggaaaacgacgacgccaaccgcgctctg
atgggttcgaacatgcagcgtcaggcggttccgcttctgcgggccgaggcgccgctggtc
ggcaccggcatcgaggagaaggttgcgatcgactccggcgcggcgatccaggccaaacgg
gccggcatcatcgaccaggtcgatgcgcagcgtatcgtgatccgggccacctccgatctg
gagctgggcgacgcgggcgttgacatctaccggatgcgcaagttccagcgttccaaccag
aacacctgtatcaaccagcgtccgctggtgaaggtgggcgacactgtgaccaagggcgaa
gtcatcgccgacggtccgtcaaccgatatgggcgaactggctctgggtaaaaacgtggtc
gtcgcgtttatgccgtggaacggctacaactacgaagactcgatcctgatctccgagcgc
atcgcgcgtgacgacgtcttcacctcggttcacattgaggaattcgaagtcgccgcccgc
gacaccaagcttggtccggaagaaatcacccgcgacatccccaacgtcggcgaggaagcc
ctgcgcaacctcgacgaagcgggcatcgtctacatcggtgccgatgtggagccgggcgac
attctggtcggtaagatcacgcccaagggcgaaagcccgatgaccccggaagagaagctc
ttgcgcgccatcttcggcgagaaggcttccgacgtgcgcgacacctcgctgcgcgtgaag
ccgggcgactacggtactgtcgtcgaggtgcgcgtcttcaaccgccacggtgtggaaaaa
gacgagcgtgcgcttcagatcgagcgtgaggaagtcgaacgtctggcccgtgaccgggac
gacgagctggcgatcctggaccgcaacatctatgcgcgactgcgcggcatgatcctgggc
aaagtggctgtcaaaggtccgaaaggcgtccgcgccggtgccgagatcaccgaggaactg
ctggactcgctgtcccgcggccagtggtggatgctggcgctggaagacgagaaggatgcc
caggttgtcgaggccctgaacgagcagtacgaggcgcagaagcgcgccctggacgcccgt
ttcgaggacaaggtcgaaaaagtccgccgcggcgacgacctgccgccgggtgtgatgaag
atggtcaaagtcttcatcgccgtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacggcaacaaaggtgtgatttcgaaagtggtgccgatggaggacatgccgttcctc
gccgacggtacgccggtcgacttctgccttaacccgctgggcgttccgtcgcggatgaac
gtcggtcagatcttggagacccacatgggctgggccgcgcgcggtcttggcatcaaggtg
gacgacgcgcttcaggaataccgccgctccggcgacctgacaccggtccgtgacgcgatg
catcacgcctatggcgacgacgtctatgacgaaggcatcgcctctatgtccgaggccgct
ctggtcgaggccgcaggcaacgtgtcccgcggtgtgccgattgcgaccccggtcttcgac
ggcgccaaggaagacgacgtgaacgacgcgctggtgcgtgcgggctttgaccagtccggc
cagtcgatcctgttcgacggccgcaccggcgagcagttcgcgcgtcccgtaaccgttggc
atcaagtacctgctcaagctgcaccacctggtggacgacaagatccacgcgcgttccacc
ggcccgtacagcctcgtcacccagcaaccgctgggcggtaaggcgcagttcggcggtcag
cgcttcggtgagatggaggtctgggctctggaagcttacggcgccgcctacaccctgcag
gagatgctcaccgtgaaatcggatgacgtcgccggccggaccaaggtctatgagtcgatc
gtcaagggcgaggacaactttgaagcgggcgttccggaatcgttcaacgttctggttaaa
gaagtccgcggcctcggcctgaacatggaactcctggatgcggaagaagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (87)   
   KEGG ORTHOLOGY (1)   
   RefGene (84)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (102)   

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