KEGG   Leisingera methylohalidivorans: METH_21090Help
Entry
METH_21090        CDS       T02961                                 

Definition
5-hydroxymethyluracil DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lmd  Leisingera methylohalidivorans
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:lmd00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    METH_21090
Enzymes [BR:lmd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     METH_21090
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     METH_21090
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
4142671..4143522
Genome map
AA seq 283 aa AA seqDB search
MPELPEVETVKRGLAPAMEGAVIIKASVNRPGLRWPFPERMAERLTGARVNGLRRRSKYI
LADLDTDETLLIHLGMSGRMTVSGDPLGQFAHEHPQAEKHDHVVFDMDNDARITFNDPRR
FGAMDLLDTATAGNHKLLAALGPEPLGNDFHEDHLVAAFQGRNTPVKSALLDQGIIAGLG
NIYVCEALFRAGISPRRKAGQIAAHRVAALVPIIRQVLQDAIRAGGSSLKDFRQASGELG
YFQHSFDAYGREGEPCRRAGCDGSIVRITQSGRSTFYCVKCQR
NT seq 852 nt NT seq  +upstreamnt  +downstreamnt
atgccagaattgcccgaggtcgagacggtgaaacgcggattggcgccggccatggagggg
gcggtgatcataaaagcgtctgtgaaccggcctggtctgcgctggccgtttccagagcgg
atggccgagcggcttaccggcgcgcgggtgaatggtttacggcggcggtcgaaatacatt
cttgccgacctcgacacggatgagaccttgctgatccatctgggcatgtccgggcggatg
acggtgtcgggtgatccgctggggcagttcgcgcatgagcacccgcaggcggaaaaacac
gaccatgtggtgttcgacatggacaacgatgcccgcatcaccttcaacgatccgcgccgg
ttcggggcgatggatttgctggatactgcgacagccgggaatcacaaactgctggcggcg
ctgggcccggagccgttgggcaatgatttccacgaagatcacctggtagccgctttccag
ggccgtaacacgccggtgaaatccgcattactggatcagggaatcattgcgggtcttggt
aacatctatgtctgtgaagcgttgttccgtgcgggaatttcgccacgccgcaaggctggg
cagattgctgcgcaccgggttgccgcgctggtgccgatcatccgccaagtgctgcaagat
gccatccgcgccgggggttcttctctcaaggattttcggcaagcctctggtgaacttgga
tatttccaacacagtttcgatgcctatgggcgcgaaggcgaaccctgccgccgcgcgggt
tgcgacgggtcaattgtcagaatcactcagtcaggacgctctaccttctattgtgtaaag
tgccaaagatag

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