KEGG   Leishmania mexicana: LMXM_24_1370
Entry
LMXM_24_1370      CDS       T02288                                 
Name
(RefSeq) putative histone deacetylase
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lmi  Leishmania mexicana
Pathway
lmi03082  ATP-dependent chromatin remodeling
lmi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lmi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    LMXM_24_1370
   03083 Polycomb repressive complex
    LMXM_24_1370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lmi03036]
    LMXM_24_1370
Enzymes [BR:lmi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     LMXM_24_1370
Chromosome and associated proteins [BR:lmi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     LMXM_24_1370
   HDAC complexes
    Sin3A-HDAC complex
     LMXM_24_1370
    BRAF-HDAC complex
     LMXM_24_1370
    REST complex
     LMXM_24_1370
    SHIP complex
     LMXM_24_1370
    MiDAC complex
     LMXM_24_1370
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     LMXM_24_1370
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    LMXM_24_1370
  Chromatin remodeling factors
   NuRD complex
    LMXM_24_1370
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 13448879
NCBI-ProteinID: XP_003875952
UniProt: E9AWY0
Position
24:487592..489229
AA seq 545 aa
MSSPEQLPALSAGGSPSSGGASSHHSPHEASLPFPASAITGDASAESPRASSVPPSSTAS
EESAATSPLERKPDAAASRPGRRKVVYFVDHSVTAIAYAEGHLMRPSRVRALHALVHSLG
LDSAEYMTVCHARPATAEEMGAFHRSAYLECLRQAPVICGNPLDEISLAFQKEFDVPFAS
QNGDCPLFPEVWALVSSQAGASLACAEALVRGDATVAMNWAGGMHHAAAAHASGFCFVND
IVLCIRRLLRHYQRVLYVDLDVHHGDGVEGAFYGNHRVMTLSLHQFGNGFFPGTGDYPTR
ETADSFAINVPLPTRTGDAAYLLSFRTALSSVVQCFDPEAMVVQCGADTIAGDLIGRLCV
TTLAHTQCVADVLSLERPTVLLGGGGYHVFHTARCWAIHTATALGRTAAQLPLYIPRTDP
YYMDYRRECTPKRPTLHVFLDPDVDDPLPLGDSLAFWRQLCRSIQWQMRTARLVRQGFSR
TVQLCRQRRAALLRQFATQEAGRDSGIGVSASKRQRSANVTDRDAKEGGGGQSGLGVMVA
EEECT
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgtcatctccggagcagcttcccgcgctctcagcgggggggtcaccgtcgtcgggaggg
gcttcctcgcatcactcaccgcacgaagcatcgctcccgtttcccgcttcggcgattacc
ggcgacgcctctgcggagtctccgcgcgcgtcgtcggtgccaccgtcttcaacagcaagc
gaggagagcgcagcaacatcgccactggagcgaaagccagatgcagcggcgtcacgccct
gggagacggaaggtggtgtactttgtagatcactccgtcactgccatagcctatgcggag
ggtcatttgatgcggccgtctcgtgtgcgtgcgctgcacgcgcttgttcattccctgggc
ctcgacagtgcagaatacatgactgtgtgtcatgctcgtccggcgacggcggaggagatg
ggggcgtttcaccgcagcgcgtacttggaatgcctgcggcaggcacccgtgatttgcggg
aatccgctggacgagatatccctagcttttcagaaggaatttgacgtcccgttcgcgtct
cagaacggcgactgtcctctctttcctgaggtgtgggcgctggtgtccagccaagccggc
gcctcgcttgcctgtgcagaggcccttgtacgcggcgatgccacggtggcgatgaactgg
gcaggtggcatgcatcacgccgctgccgcccacgcaagcgggttctgctttgtgaatgac
attgtgttgtgcatccgccggctgctgcggcactaccagcgcgtcctctacgttgacctt
gacgtgcatcacggggacggcgtggagggggccttttacggcaatcaccgcgtgatgacg
ctctcgctgcaccagttcggcaacggcttcttccccggcaccggtgactacccgacgcgt
gagacggccgacagcttcgccatcaacgtcccgctgcccacgcgcacgggagacgccgcg
tacctcttgtcgttccgcactgcactgtccagcgtggttcagtgctttgatccggaggcg
atggtcgtgcaatgcggcgcggacaccatagcgggagacctcattgggcggctttgcgtg
actacattggcgcacacgcagtgtgtggcagatgtgctgtcgcttgagcgaccgacggta
ctgcttggtggagggggttatcacgtgtttcacacggcgcgctgctgggcgatccacacc
gccaccgcgctaggtcgcacagctgcgcagttgcccttgtacatcccgcgcacagacccc
tactatatggattaccggcgcgaatgcacaccgaagcgtccgacgctgcatgtgtttctc
gaccctgacgtcgatgatccgctgccgttgggggacagcttggcgttctggcgtcagctc
tgtcgcagcatccagtggcagatgcgcactgcccgccttgtgcggcaggggttttctcgt
acagtacagctttgccggcagcgaagggcagcgttgctgaggcagttcgctacgcaagag
gcagggagggactcgggtatcggtgtcagcgcctctaagcgccagcggtcagcaaatgta
acggaccgcgatgccaaggaggggggcggaggacagagtggtctcggcgtgatggttgcg
gaggaggagtgcacttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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