KEGG   Leishmania mexicana: LMXM_36_6350
Entry
LMXM_36_6350      CDS       T02288                                 
Name
(RefSeq) hypothetical protein
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
lmi  Leishmania mexicana
Pathway
lmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LMXM_36_6350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmi03019]
    LMXM_36_6350
Enzymes [BR:lmi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     LMXM_36_6350
Messenger RNA biogenesis [BR:lmi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     LMXM_36_6350
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 13448531
NCBI-ProteinID: XP_003874995
UniProt: E9AU71
Position
20:complement(2431786..2433318)
AA seq 510 aa
MDITRFNQLVALPDFAREVERCEFCAIDQEMTGVDVTGVSTSFGAPPETVYHAKRAAVEA
YNAFQMGIALFTKTENNTYEVRPYNFYLLNGSGDLRLNLSVVSFLAANHLNFQAWLTSGL
PFCNEQEEATYEEKLITPFTDHTEQQMADSLINAIDEWMPTGSEALLKELPCVIDLARRL
QSFLERRYDSRITVNYDGKPYLGQKMKFTLKKLDTNEWISEKEKRRLQCERDRAQHLGFR
QFWKILVQSRKPIVGHNFMQDVMFMVHMHETPLSQDYLEFKKVLQRTLPSIYDTKTMAAK
LTGDDAFPVTHLEPLYQECRRRASLSSDQFTQEYRLPPGFYGYNDSAVKQQSKAHEAAYD
AYMTGIAFSLMHKLYPGAFMEVKNVISAFGSAYFCCVDTDDQLVNPSTFILKCAVPCHSE
EIEALFFATEDMTTQVAENGKVDMRKLSYQVNGLANNEGTKKYSSFCVRMKQAMGLDDLN
RRLQSLRNKELSPSTNVNSLLLDLVTLHNA
NT seq 1533 nt   +upstreamnt  +downstreamnt
atggacattacaaggttcaaccaacttgtggcactccctgactttgcccgcgaagtagag
cggtgcgagttctgcgcaattgatcaggaaatgacgggtgtcgatgtaaccggtgtttcc
acgtcgttcggtgccccgccagagacggtatatcatgcgaaacgcgctgctgtggaagca
tacaatgcctttcaaatgggcatcgctctcttcacaaaaactgagaataacacgtacgag
gttcgtccatacaacttctacctgctcaatggcagtggggacctgcggctgaacctctcg
gttgtctcctttttggcagcaaatcacctgaatttccaggcgtggctcacatccgggctt
cccttctgcaacgaacaagaggaagctacctacgaggagaagcttataactccctttacc
gaccataccgagcagcaaatggctgattcgctcatcaacgcgattgacgagtggatgccg
actggcagtgaggcactactcaaagaactgccctgcgtgatagatcttgcccggcgtctg
cagagctttctggagcgtcgctacgactctcgcatcaccgtcaactacgatggaaagcca
tacctggggcagaaaatgaagtttacgctgaagaaactggacacaaatgagtggatcagc
gaaaaggaaaaaaggcgtttgcaatgcgagcgcgaccgtgcgcaacacctcggctttcga
caattctggaaaattcttgtgcagagcagaaagccgattgtcggtcacaattttatgcaa
gatgttatgttcatggttcacatgcacgaaacgccgctttcgcaggattacctcgaattc
aagaaagtgctgcaacgcacactgccctctatttacgacacaaaaaccatggccgccaag
ttgacgggggacgatgcctttccagtcacacacttggagcctttgtatcaagagtgtcgc
cgccgagccagtctctcgagcgaccaattcacgcaagagtaccggttaccacctgggttt
tatgggtacaatgactccgctgtaaagcagcaaagcaaggcacacgaagcagcatatgac
gcgtacatgacaggaatcgcgttctcacttatgcataaactttaccccggagccttcatg
gaggtgaaaaatgttatttcagcatttggaagtgcttacttttgttgcgttgacacagat
gaccaactagttaaccccagcacattcattttgaaatgtgctgttccctgccattcggaa
gagattgaagcactcttttttgccactgaggatatgaccacccaagtggcagaaaatgga
aaagtggatatgagaaaactttcctaccaggtcaacggtcttgcgaacaacgagggtaca
aaaaagtactcgtcattctgcgttcgaatgaaacaggctatgggactcgatgatctaaac
cgtcgcctacagtcgctccggaacaaggaattgtctccgagcacaaacgtcaactctctg
ttgctagatctcgtcaccttgcacaacgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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