KEGG   Listeria monocytogenes J1-220: LM220_12117Help
Entry
LM220_12117       CDS       T02776                                 

Definition
5-hydroxymethyluracil DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lmoj  Listeria monocytogenes J1-220
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:lmoj00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    LM220_12117
Enzymes [BR:lmoj01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     LM220_12117
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     LM220_12117
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(1388204..1389025)
Genome map
AA seq 273 aa AA seqDB search
MPEMPEVENVRATLQELVPGKKIDQVIVRVPKMIVSTPPDEFVHMLVGQEIEGVRRRGKF
LLFDLTNCTILSHLRMEGKFRLMDEKEEVSKHTHIIFHFEDHTELRFLDVRKFGTMEVTN
KYGEGETRSIKKLGPEPLTQAFTLTDFATGVKKTSRAIKTALLDQKLVAGVGNIYADEIC
FEAKVRPERAANSLSDKEIKRIFEATKSIMTEAVALGGSTVRTYVNSQGKLGQYQDKLKV
YGKTDEPCVVCGTPIEKIKLNGRGTHFCPNCQK
NT seq 822 nt NT seq  +upstreamnt  +downstreamnt
atgccagaaatgccggaagtagaaaatgtccgcgcaactttacaagaattagtcccaggt
aaaaaaatagatcaagtaattgttcgtgttccaaaaatgattgtatcaacaccacccgat
gagtttgtgcatatgcttgtcgggcaagaaatagagggtgtacgccgtcgtggtaaattc
ttactttttgacttaaccaactgtacgattttatcgcatttacgaatggaaggtaaattt
cggttaatggatgaaaaggaagaggttagcaagcatacgcatattatttttcattttgaa
gatcacacggaattgcgttttttagatgtgcgaaaatttggcacgatggaagtaacaaat
aaatacggtgagggtgaaacgcggtcgattaaaaagcttggcccagaaccgctgacgcaa
gcctttacattaacggattttgcgactggtgtaaaaaaaacaagccgcgccatcaaaacg
gctttacttgatcaaaagttagtagccggagtaggaaatatttatgcggatgaaatttgt
tttgaagcaaaagtgcgcccggaaagagcagctaactcactttcagacaaagaaatcaaa
cgtatttttgaagcgacgaaaagtattatgactgaagctgtagcacttggtggctccact
gtcagaacatatgtaaattcgcaagggaagcttggacaatatcaagataaattaaaagta
tacggcaaaacagacgaaccgtgtgttgtttgtggaacgccaattgaaaaaattaaatta
aacggacgcgggacacatttttgcccgaattgccaaaaatag

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