KEGG T03479: IJ09

Listeria monocytogenes Lm60 (serotype 1/2a): IJ09_06000

Entry

IJ09_06000        CDS       T03479

Name

(GenBank) DEAD/DEAH box helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

lmom Listeria monocytogenes Lm60 (serotype 1/2a)

Pathway

lmom03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:lmom00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IJ09_06000
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmom03019]
    IJ09_06000
   03009 Ribosome biogenesis [BR:lmom03009]
    IJ09_06000
Enzymes [BR:lmom01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     IJ09_06000
Messenger RNA biogenesis [BR:lmom03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     IJ09_06000
Ribosome biogenesis [BR:lmom03009]
Prokaryotic type
  rRNA helicases
   IJ09_06000

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII Helicase_RecD CMS1 AAA_19 NABP

Other DBs

NCBI-ProteinID:

AIL67333

Position

complement(1160288..1161856)

AA seq 522 aa
MTLTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGL
PMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLK
KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQT
LLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQ
APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATD
VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEET
TKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAM
LKMLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGK
GRRSGGGSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK

NT seq 1569 nt +upstreamnt +downstreamnt
atgacattgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaat
cggatggggtttgaagaagcaacaccaatccaagaaaagacaattccactaggattagaa
ggtaaagacttaatcgggcaagcacaaacaggtactggtaaaacagccgcttttggtctt
ccaatgattcacaaaattgaccaaaagagtaacaacgtacaagctttaattattgctcca
acacgtgaacttgcaatccaagtttcagaagagctttataaacttagctatgataaacat
gtacgtgtgctagcggtttacggtggtagtgatatcagccgtcaaatccgttcacttaag
aaaaacccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgc
acactgaaactagatcacgtggaaacacttgtactagatgaagcagacgaaatgctaaac
atgggcttcattgatgatatcgaaactattctaaaagaagtaccagcagaacgtcaaact
ttactattttctgcaacaatgcctgatccaattcgccgtatcggtgaacgtttcatgcat
agcccagaacttattcgtattaaagcaaaagaaatgactgcactattaatcgaacaattc
ttcgtaaaagtgcatgaaaaagaaaaatttgacgtattatctcgtttattagatgttcaa
gcaccagaattagcaattgtttttggtcgtacaaaacgtcgtgtagacgaactatctcgc
gcgcttgatatgcgtggttacgtggctgaaggtatccacggtgacttaacgcaagcaaaa
cgtatgagcgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagac
gtagcagcacgtggacttgatatttccggtgtaacacatgtatataactatgatattcca
caagatccagaaagctatgttcaccgtattggtcgtactggtcgtgctggtaaagaaggt
atggcgattacattcgtacaacctcgtgaaatgggttatttacgtattgtggaagaaact
acgaaaaaacgtatgcaaccacttcaagctcctacatgggacgaagcatttgcaggccaa
ttacgcgtagcaactgaaaaaattcaagaagcaattacagaagaaaacttagctgactac
aaaacgtttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatg
cttaaaatgttagcgaaagaaccagataaaactcctgtccatattactgaagagcgtcca
ttaccatcccgtggtggcggtggctacaaaggtaaaaatggtaaaggcggcaaaggtggc
ggctatcgcggcggaagcggcaaaggcggaagctatcgtgatcgtaacaacagcggtaaa
ggtcgtcgtagcggcggcggttccggtggtggaagcggctctggcggtggcggcaatcgt
gatcgtcgtggcggcggagaacaacgcagcggcggcaacaaaggcaactactcacaaaaa
tctaaataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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