KEGG   Listeria monocytogenes SLCC2376 (serotype 4c): LMOSLCC2376_2341
Entry
LMOSLCC2376_2341  CDS       T02222                                 
Symbol
vacB
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lmon  Listeria monocytogenes SLCC2376 (serotype 4c)
Pathway
lmon03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmon00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LMOSLCC2376_2341 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmon03019]
    LMOSLCC2376_2341 (vacB)
   03016 Transfer RNA biogenesis [BR:lmon03016]
    LMOSLCC2376_2341 (vacB)
Enzymes [BR:lmon01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LMOSLCC2376_2341 (vacB)
Messenger RNA biogenesis [BR:lmon03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LMOSLCC2376_2341 (vacB)
Transfer RNA biogenesis [BR:lmon03016]
 Prokaryotic type
  tRNA degradation factors
   LMOSLCC2376_2341 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: CBY64373
Position
complement(2415189..2417570)
AA seq 793 aa
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRK
GDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSTAPDV
VDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSP
LDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIF
ESIIKTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFD
FKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDK
QKRQREKPIDKTRNFKSNQKKGRNKRRTGNSDETKPKTERKDDEWYTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq 2382 nt   +upstreamnt  +downstreamnt
gtggaacaaaaacaaatggaagaaaaaattatgaatctattaacttcagcgccggataaa
acatttgcgcttgaagatttagaaatagaaatagctttaaataatgcggatgattttaaa
ttaatggtgaaagctttagtgaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgcattaccagaaaaaatggacttagtaaaaggaacattccgcgcgcatgaa
cgaggttttggctttgttctcccggaagaaaaagaaatggacgatatttttatcccacca
aatgaagtaaaagatgcaatgaatggcgatttagtttttgcaacgattacgaaacgtaaa
ggcgataatttggcagagggtacgattaagaaaattgtcgaacggaagacaacgcaaatc
gtcggaacttatatggaagacttagctggtactccaattgtgatgccggatgataagcga
cttttcggtgaagtggaaattgatttagaggatggcttaaaaccagtcgacgggcataaa
gttatcgttgaattgacggaatatgcaactgggcatgcgcgtgcaagaggggttgttaaa
tcaatcatcggtcaccgcaatgacccaggtgtggatattttatcgattattcataaacac
ggtatttcaatcgggttcccggaagaagtcatggagcaagtaagtacagcgccagatgtg
gttgatgattcggatattggtaaccgtcgtgatcttcgtgaccaaatgattattacgatt
gacggggcagacgctaaagatttagatgatgctgtaactgttacgcaactaccgaatggc
aactggaagctaggtgttcatattgcggatgtaacgcattatgtaacagaaggctcgccg
cttgatgtcgaagcgcaagaacgtggaacgagtgtttatttggttgaccgcgtaattccg
atgttgccacataaactatcgaacggaatttgctcgcttaacccacaagtagatcgtttt
actatgagttgtgaaatggaaatcgatgaagaaggtcatgtggttaaccacgaaattttt
gaaagtattattaaaacaacggaacgtatgacgtatacggatgtaaatgatattttagtt
gaaaatgacgaagctttgcgtgaaaaatacgcgccaatcgttccaatgcttgaaaagatg
caacatttggccgaaatccttcgccgtaaacgtgaaaaacgtggcgcgattgattttgac
tttaaagaagcacgtgtagttgttgatgaagacggtcatccagaagcagttgtgatgcgc
gaacgttcagcgggagagcatttgattgaagagtttatgcttgctgccaatgaaacagtt
gcagagcatttccactggatggatgtaccatttatttaccgtatccatgaagatccaaaa
gaagataaattagcgcggttctttgaatttattacgaactttggtttgattgtgaagggg
acagctaacgatattcacccagctgctttacaacaagtactagaagaagtaaaaggtaaa
ccggaagagatggttgtttcgactgttatgctgcgttcgatgcaacaagcgaagtatgac
acagtaagcgccggacactttggtttgtctactgatttctatacacatttcacgtcgcca
attcgtcgttacccggatttgattgttcataggttgattagagagtatttaattaatggg
gatgttcgtccggaaacgttagaaaaacgcgctgaggagcttcctgagattgctgaacat
agctcgaaaatggagcgccgtgccgttgaagcagagcgcgaaacagacgaactgaagaaa
acggaattcatggtcgacaaagtgggcgaacgtttcatcggaatcattagttcggtaacc
aattttggcttatttatcgaactaccgacaacgattgaaggccttgtccatgtgagcgca
atgaaaggcgattacttcaaattccaccaaaatcaattagcgatgattggcgaaagaaca
ggccaaatttatcgtattggtgatgaagtggaagtcgaagtaactaaagtagacgtggat
gctcgtgaaatcgattttgcgcttcgtagtgaaggtaagccaggtccagtgagcgataaa
caaaagcgccaacgcgaaaaaccaatcgataaaactagaaacttcaagagtaaccaaaaa
aaaggtcgtaataaacgtagaactggtaattcagatgaaacgaaaccaaaaacagaacgc
aaagatgacgaatggtatactaaacctaaaaagaaaaagaagaaaaaacctttttatcaa
ggtgtagcaaaagaaagcccgaagaagaaaaaacgtcgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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