KEGG   Listeria monocytogenes J1-220 (serotype 4b): LM1816_15897
Entry
LM1816_15897      CDS       T02801                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
lmoz  Listeria monocytogenes J1-220 (serotype 4b)
Pathway
lmoz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmoz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LM1816_15897
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lmoz03021]
    LM1816_15897
   03019 Messenger RNA biogenesis [BR:lmoz03019]
    LM1816_15897
Transcription machinery [BR:lmoz03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LM1816_15897
Messenger RNA biogenesis [BR:lmoz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LM1816_15897
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N ATPase_2 OB_RNB NACHT AAA_25 AAA AAA_22 Spore_III_AA Mor
Other DBs
NCBI-ProteinID: EGF36421
Position
complement(2721172..2722443)
AA seq 423 aa
MAKLSIAHLESLTIKEIYALAKEHKITYYSKLTKRELIFALLKSNAEKEGFFFMEGVLEI
IPNEGFGFLRPINYSSSSEDIYISASQIRRFELRTGDKVSGKVRPPKENERYFGLLHVEA
VNGENPEVAKERVHFPGLTPLYPDRQIHLETGKNPISTRTIDLISPIGFGQRGLIVAPPK
AGKTVLLKEIANAITTNHPESELIVLLIDERPEEVTDIERSVKADVVSSTFDEVPENHIK
VAELVLERAMRLVEQKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRQLAERRVFPAIDMR
RSGTRKEELLLSKERLEQLWKIRKAMPKQSDGLDISERFVRYLKKTENNEAFYELLQEEM
FKK
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggctaaactgtccattgcacacttagaaagtttaacaatcaaagagatatatgcctta
gcaaaagaacacaaaattacttactatagtaaattaacaaaacgagaattgatttttgct
ttattaaaatcaaacgcagaaaaagaaggatttttcttcatggaaggtgtattagaaatt
attccaaatgaaggttttggcttcttacgccctatcaactattcatctagttcggaagat
atttacatctctgcttcccaaattagacgtttcgagttaagaactggggataaggtttct
ggaaaagttcgtcctccgaaagaaaatgaacgttactttggcttactccatgttgaggct
gtcaatggagaaaatcctgaagtggctaaagaaagagtgcatttcccaggactaacaccg
ctttatccagatcgtcaaattcatttagaaacaggcaaaaatcctatttccacaagaacg
attgatttgatttcaccaattggttttggtcaacgcggacttattgtagctccaccaaaa
gcaggtaaaacggtattacttaaagaaattgcgaacgcgattactactaatcatccagag
tcagaattgattgtcttgttaattgatgagcgtccggaagaagtaactgatatcgaacgt
tctgtaaaggccgatgttgtcagttccacatttgatgaggtacctgaaaatcacattaaa
gtagcagaactggttcttgaacgagcgatgcgtttagtagaacaaaaacgcgatgtggtc
attttaatggatagtattacgcgacttgcgagggcctataacctagtgattccgccaagt
ggtcgaacactttcaggggggattgatcctgctgcattccatagaccgaagcgcttcttt
ggagctgctcgtaatattgaagagggtggaagcttaaccattcttgccacagcattagtt
gacacgggttctcgaatggacgatgttatttacgaagaattcaaagggacaggcaacatg
gagttacatcttgatcgccaacttgcagaacgtcgcgtttttcctgctatcgatatgcgt
cgctccggcacaagaaaagaagaattactactatccaaagagcgtcttgaacaactctgg
aaaatccgcaaagcgatgccgaaacaaagcgatggactagatatttcagaacgatttgta
cgttatttgaagaaaacggagaataatgaagctttttatgagttactacaagaagagatg
tttaaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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