KEGG   Listeria monocytogenes R479a (serotype 1/2a): LMR479A_1417
Entry
LMR479A_1417      CDS       T03180                                 
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase (PNPase)
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
lmr  Listeria monocytogenes R479a (serotype 1/2a)
Pathway
lmr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LMR479A_1417 (pnpA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmr03019]
    LMR479A_1417 (pnpA)
   03016 Transfer RNA biogenesis [BR:lmr03016]
    LMR479A_1417 (pnpA)
Enzymes [BR:lmr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     LMR479A_1417 (pnpA)
Messenger RNA biogenesis [BR:lmr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LMR479A_1417 (pnpA)
Transfer RNA biogenesis [BR:lmr03016]
 Prokaryotic type
  tRNA degradation factors
   LMR479A_1417 (pnpA)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 RNase_II_C_S1 S1_2 CvfB_2nd SPATA25 RICTOR_M DUF1773
Other DBs
NCBI-ProteinID: CDM16639
Position
1368071..1370242
AA seq 723 aa
MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTV
NYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVD
QDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAG
TYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPE
LEAEVKAASEGKMKTAIKTEEKKAREAAIEEVKEEILESYKAKELENESEILSEVAHILE
MIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAP
LREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSE
EEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTIL
SDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLT
STISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIA
SQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHER
VGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQPEGDKKPQAEKKFYPKTKKP
ESK
NT seq 2172 nt   +upstreamnt  +downstreamnt
atgtctgaaaaacaagtattttcaacagagtgggcaggtaaaacattatctgttgaagta
ggtcaattagcaaaacaagcaagtggggcagccttaattcgttacggcgatacggttgtt
ttaacagccgcagtaggttctaaaaaaccacgtccaggcgactttttcccattaactgtt
aactatgaagaaaaaatgtattccgttggtaaagttcccggtggattcttaaaacgtgaa
ggacgtccaagcgaccgtgctacattaacagcgcgtcttattgaccgtccaatccgtccg
ctatttgcagaaggtttccgtaatgaagttcaaattacttctactgtattcagtgtggat
caagattgttcgccagaaatggcagcaatgcttggatcttctgttgcattagttatttcc
gatattccatttgaaggaccaatcgctggtgttgacgttggtcgtatcgatggaaaatac
gttattaacccaacaatcgagcaagcagaaaaaagcgatattagcttaactgttgcagga
acttatgatgcaatcaacatggtagaggctggagcgaaagaagtttcagaagaagcaatg
cttgaagcaattatgtttggtcatgaagaaattaaacgtctttgtgaattccaacaacaa
attattgcggcagttggtaaagaaaaacgcgaaatcgaactttttgtaagcgatcctgaa
cttgaagcagaagtaaaagcagctagtgaaggtaaaatgaaaacagctatcaaaacagaa
gagaaaaaagcacgtgaagctgcaattgaagaagtaaaagaagaaattttagaaagctat
aaagcaaaagaattagaaaatgaatctgaaattcttagcgaagtagctcatattcttgaa
atgattgaaaaagatgaaatgcgtcgtctaatttctcaagataaaatccgtccagatggt
cgtaaagtaaacgaaattcgcccgctttcttctgaagttggcatgcttccacgtgtccat
ggttctggtttattcactcgtggccaaacacaagctctaagcgtgtgtacactggcaccg
cttcgtgaacaccaaattattgatggtctaggaacagaagagtacaaacgctttatgcac
cattataatttcccgcaatttagtgttggggaaactggccctcgtcgtgctccagggcgt
cgtgaaatcggtcacggtgcattaggcgaacgtgcattgcaatatgttattccttccgaa
gaggaattcccatacacaatccgtttagtatcagaagttcttgaatctaacggatctagc
tctcaagcaagtatttgtggttctacacttgcaatgcttgacgctggtgttccaattaaa
gcgccagttgcaggtatcgcgatgggtcttgtaaaacttggcgatgactacacaatcctt
tctgatatccaaggtatggaagatcactttggcgatatggactttaaagttgctgggaca
aaagacggtattacagcacttcaaatggatatcaaaatcgatggtttgagccgccaaatt
ttggacgaagcattaacgcaagcaaaagaagggcgcctacacattctagaacacttaact
agcacaattagcgcaccacgtgaagaactttctgcttatgctccaaaaatcattacactt
aacatcaaacctgagaaaatcaaagatgttatcggacctggtggaaaacaaatcaatgca
attattgatgaaactggcgtaaaaattgatatcgaacaagatggtacagtgtacattgct
tcccaagatcaagcaatgaaccgtaaagcaattgctatcatcgaagacatcgttcgtgaa
gttgaagtcggagaagtttatactggtaaagttcgtcgtatcgaaaaatttggtgccttt
gttgaattattcaaaggtacagatggtttagttcatatttctgaattagcgcatgaacgc
gttgggaaagtagaagatatcctaaaattaggtgatgaagttactgttaaagttatcgaa
gtagaccaacaaggccgcgttaacttatcacgtaaagctttgcttgagaaaaaagaacaa
ccagaaggcgataaaaaaccacaagcagagaaaaaattctatccaaaaacgaaaaaacca
gaatctaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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