KEGG   Listeria monocytogenes 08-5923 (serotype 1/2a): LM5923_1909
Entry
LM5923_1909       CDS       T01164                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lmy  Listeria monocytogenes 08-5923 (serotype 1/2a)
Pathway
lmy03030  DNA replication
lmy03410  Base excision repair
lmy03420  Nucleotide excision repair
lmy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lmy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LM5923_1909 (ligA)
   03410 Base excision repair
    LM5923_1909 (ligA)
   03420 Nucleotide excision repair
    LM5923_1909 (ligA)
   03430 Mismatch repair
    LM5923_1909 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lmy03032]
    LM5923_1909 (ligA)
   03400 DNA repair and recombination proteins [BR:lmy03400]
    LM5923_1909 (ligA)
Enzymes [BR:lmy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LM5923_1909 (ligA)
DNA replication proteins [BR:lmy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LM5923_1909 (ligA)
DNA repair and recombination proteins [BR:lmy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LM5923_1909 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LM5923_1909 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     LM5923_1909 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LM5923_1909 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RNA_pol_A_CTD HHH_8
Other DBs
NCBI-ProteinID: ADB71750
Position
complement(1913131..1915146)
AA seq 671 aa
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKR
VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVGDDIAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLE
TLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMGTTVKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTCDSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLKVADKETLTS
INDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI
EYLPDEGGLNE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggctgataaaaaacggtatgaagaactaatcaacatacttgatcaatacagctatgat
tattatgtaattgataatccaacagtagaagatgccgaatatgatcagaagatgcaagaa
ttacttaaaatagaagaagcgcatcccgagtgggttacacctgagtcaccgtcgaaacga
gttggcggagaagttttagaaggtttcaaaaaagtagcacatgacaccccaatgttaagt
cttgccaacgcttttaaccatgaagatttggcggattttgaccgccgaattcgcgacaaa
gtgggcgatgatattgcttatatgtgcgaacttaaaattgacggactagcagtatccctt
caatacgaaaatggtaaatacaaacaaggtgctacccgcggtgatggaaccattggagaa
gacattaccgctaacttgcgcacgattcgttccattccgatgaaacttcaaaaggattat
tccattgaagttcgcggtgaagctttcatgccgaaacgctccttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgttatttgctaatccgcgaaatgctgcggctggctcg
ctccgacaattagacacaaaaatcgcggcgtcgagaaatctcgatatcttcctgtatgca
gtagctgatttcggtgaaatgggcgttgaaacacatagcgccggtttagatatgcttgaa
acacttggtcttaaagtcaataaagagcgccggctttgcagtagtttagaagaagtatat
gcttacattgacgaatggacagaaaaacgcgccgacttagcatatgatattgatggcatt
gttctaaaattaaacaacttagaacaacaacgccaaatgggaaccaccgttaaatcacct
cgttggtcgattgcttataaatttccagccgaagaagtaccaactaagttactcgacatt
gaattaaatgtaggtagaacaggtgtaataactcccaccgccgtgttagaaccagtgaga
gtggcagggacaaccgttagccgtgcttcccttcataatgaagatttaattacggaaaaa
gatatccgcattggcgacactgttttaatcaaaaaagctggcgatatcattccagaagtt
attaaaagcatcaccgaagaacgtagcggaagtgaagaaccattccatatgccaaaaaat
tgtccgacatgcgacagtgaactggttcgtttggaagaagaagtggcgctaagatgcatt
aatcctaagtgcccagctcaaataaaagaaggtcttatccactttgtttccaggaatgca
atgaatattgacggacttggcgaaaaagtaattattcagttgttttcacagcatttaatt
aaagatgtagcagatttgtttttcctttcgaaggagaaactgttagaattagaaagaatg
ggtgagaaatcagtaactaatttactggcatccatcgaagcaagtaaacaaaactcgctt
gaaaaactactttttggcttaggaattcgccatgttggtgctaaagctgccaaatcactt
gccgttcatttcgaaacaatggataatttaaaagttgcggacaaagaaacactgacgagt
attaacgacattggtgaaaaaatggcagacagtattgtgacctattttgcgaatgaagaa
gtacatgatttattagaagaactaaaaagggctggcgtcaatatgacctatacagggcca
aaactagaagatatgtccgaggaagaacttgttttcgcaggtaaaaccgttgtcttaact
gggaaactagagaagttaacacgaaatgatgcaaaagcactaatcgaatccctcggaggg
aatgtttctgggagcgtcagtaagaaaacagatgttgttgtagctggcagtgatgctggt
tctaaactagccaaagctgaagaactagccattcctatttggtcagaagaagacttaata
gagtacttaccagacgaaggtggattaaacgaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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