KEGG T04150: LIP

Limnochorda pilosa: LIP_1377

Entry

LIP_1377          CDS       T04150

Name

(GenBank) RNA methyltransferase

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

lpil Limnochorda pilosa

Brite

KEGG Orthology (KO) [BR:lpil00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lpil03009]
    LIP_1377
Enzymes [BR:lpil01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     LIP_1377
Ribosome biogenesis [BR:lpil03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    LIP_1377

SSDB

Motif

Pfam:

tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 MTS Cons_hypoth95 Met_10 Methyltransf_15

Other DBs

NCBI-ProteinID:

BAS27228

UniProt:

A0A0K2SJE8

Position

1464924..1466327

AA seq 467 aa
MVSAPISGTGVAGGRLAPGDRFELRVVDLNHSGDGVGRHEGFVFFVPGALPGERVAVEVD
ALHKRYGRARLVEVLEASPDRVAPPCPVYAGCGGCQLQHLSYPAELVWKRRRVEAALQRV
GGLQGVAVEPVWGMPSGEPWGYRNKVQFPAGVAGGRLVLGFYRRGSHELVPTGDCLIQSP
GLVQAAGLCRRLADEAGLEPYDEYTGQGFLRHVVVRESSIPSQILVAWVTHTAAPIPDTV
VEGLVAGLPGLAGVVQNVQPEASNRILGSQEHLLWGRPYLEEHLGPFRFRLSIRSFFQVN
RVQAERLYRLAVELAAPEPADAALDGYCGVGGITFFLAQEARFVWGVEENRQAVSDAREN
ARRNRIGNARFAAARLEEWLPRRVREGFRPNVAVVDPPRSGVRPEALDALAASTVRRLAY
VSCDPETLARDLAHLVRKGYRVERVQPVDMFPRTAHVEAVAQVRRGR

NT seq 1404 nt +upstreamnt +downstreamnt
atggtctcggctcccatctcgggcacgggggttgccggtgggcggctcgcccccggcgac
cgcttcgagctgcgggtggtggacctgaaccactccggcgacggggtaggccggcatgag
ggcttcgtcttcttcgtcccgggagcactccccggcgagcgggtggcggtggaggtggac
gcgctccacaagcgctacggccgggcgcgcctggtggaggtcctggaggcctcgccggac
cgggtggcgcccccgtgccccgtctatgccggctgcgggggctgccagctgcagcacctg
agctacccggctgagctcgtgtggaagcgccggcgggtggaggccgcgctgcagcgggtg
ggcgggctccagggcgtggcggtggagcccgtctggggcatgccctcgggggagccgtgg
gggtatcgcaacaaggtccagttcccggcgggcgtcgcgggcggcaggctggtgctgggt
ttctaccgccggggcagccacgagctggtccccaccggcgactgcctcatccagagcccc
gggctggtgcaggccgccggcctctgccggcgcctggccgacgaggcgggcctcgagccc
tacgacgagtacacgggccagggcttcctgcgccacgtggtggtacgcgagagcagcatt
ccttcccagatcctggtggcctgggtgacccacaccgccgccccgatccccgacacggtg
gtggaaggcctggtggcgggcctccctgggctggcgggcgtggtccagaacgtgcagccc
gaggccagcaaccggatcctggggagccaggagcacctcctctggggccgcccgtacctg
gaggagcacctggggcccttccggttccgcctctcgatccggtccttcttccaggtgaac
cgggttcaggcggagcggctctaccgcctcgcggtggagctggccgcaccggaacccgcc
gacgccgccttggacggctactgcggcgtgggcggcatcaccttcttcctggcccaagag
gcccgcttcgtctggggcgtggaggagaaccgccaggccgtcagcgacgcccgggagaac
gcccgccggaaccgcatcggaaacgcccgcttcgccgccgcccgcctggaggagtggctg
ccccggcgggtgcgggagggcttccgcccgaacgtggccgtggtggacccgccccgcagc
ggcgtgcgccccgaggcgctcgacgccctggcggcttcgaccgtccgccgcctcgcctac
gtctcctgcgaccccgagaccctggcccgcgacctggcccacctggtgcggaagggctac
cgggtggagcgggtccagccggtggacatgttcccccgtaccgcacacgtggaggcggtc
gcgcaggtgcgtcggggcagatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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