KEGG T02689: LP6

Legionella pneumophila subsp. pneumophila Thunder Bay: LP6_0346

Entry

LP6_0346          CDS       T02689

Symbol

rpoA

Name

(GenBank) DNA-directed RNA polymerase subunit alpha

K03040

DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]

Organism

lpm Legionella pneumophila subsp. pneumophila Thunder Bay

Pathway

lpm03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:lpm00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LP6_0346 (rpoA)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lpm03021]
    LP6_0346 (rpoA)
   03400 DNA repair and recombination proteins [BR:lpm03400]
    LP6_0346 (rpoA)
Enzymes [BR:lpm01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LP6_0346 (rpoA)
Transcription machinery [BR:lpm03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LP6_0346 (rpoA)
DNA repair and recombination proteins [BR:lpm03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LP6_0346 (rpoA)

SSDB

Motif

Pfam:

RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RAD51D_N

Other DBs

NCBI-ProteinID:

AGN13268

Position

390382..391374

AA seq 330 aa
MYTEINEMLTPKVLKVQAESPYKARIVLEPLERGFGHTLGNALRRILLSSMPGSAITEAS
IDGVLHEYSTIEGVQEDVVDLLLNLKSVAIKLTVGNEAQITLNKEGPCQVTAGDIQLTHG
QEIINPELVIANLNEKGKLNMTLKVERGIGFHNTDAFVRYHDDEIEKKTVGKLKIDNSFS
PVKKVAYFVDSARVENRTDLDKLTIELETNGTIDAEEAIRISASILQRQLHAFVDMKFEE
SRADNKERNDFDPVLLRSVDDLELTVRSANCLKAENIHYIGDLVQRTESELLKTPNLGKK
SLTEIKDVLASRSLSLGMKLENWPPASLGE

NT seq 993 nt +upstreamnt +downstreamnt
atgtatactgaaatcaatgaaatgttgacgcctaaggttctcaaagtacaggccgagtcg
ccctataaagctagaatagttttagaacctttggagcgaggttttggtcacaccctcggc
aatgctttgagaagaatcttattgtcatccatgccaggaagtgccattactgaagcttct
atcgatggtgttttgcatgaatatagtactattgaaggtgttcaggaagatgtggttgat
ttgttgcttaacctaaaatcagttgctatcaaattgactgtaggaaacgaagcgcagatt
accttaaataaagaaggaccatgtcaagttacagctggtgatattcagttgactcatggt
caagaaattattaatccagaacttgtcatagccaatctcaatgaaaagggtaaattaaat
atgactcttaaagttgaaagaggtattggctttcataatactgatgcatttgttcgctat
catgatgatgaaattgagaaaaagacggttggaaagttaaaaattgacaacagtttttct
ccagtgaagaaagtagcttatttcgtcgacagtgcacgtgtagaaaacagaacagattta
gataagcttactattgaattagaaactaacggtactatcgatgctgaagaggcaataaga
atatctgctagtatactacaaagacagcttcatgcgtttgttgacatgaaatttgaagaa
tcacgtgctgacaataaagagcgtaatgattttgatcctgtattattacgttcagtggat
gatttggagttgactgttcgatcagctaattgtttaaaagctgaaaacattcattatata
ggcgatttggttcaaagaacagaaagtgaattattgaagacacctaatcttggtaagaaa
tcactaactgaaattaaagacgttttagcgtctcgatcattatcgctgggtatgaaactt
gagaattggccgccagcaagccttggcgagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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