KEGG   Lactiplantibacillus plantarum subsp. plantarum P-8: LBP_cg0410
Entry
LBP_cg0410        CDS       T02670                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lpr  Lactiplantibacillus plantarum subsp. plantarum P-8
Pathway
lpr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lpr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LBP_cg0410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lpr03019]
    LBP_cg0410
   03009 Ribosome biogenesis [BR:lpr03009]
    LBP_cg0410
Enzymes [BR:lpr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LBP_cg0410
Messenger RNA biogenesis [BR:lpr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LBP_cg0410
Ribosome biogenesis [BR:lpr03009]
 Prokaryotic type
  rRNA helicases
   LBP_cg0410
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 CMS1
Other DBs
NCBI-ProteinID: AGL63156
Position
423200..424786
AA seq 528 aa
MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL
QRLDFDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP
QVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLF
SATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAA
RGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKLTKK
RMLPLKPPTESEAFAGQLAAAEANVDSLVAKTSTEKYADQAAELLQKYDATDLVAALLND
LTKDDASAVPVKITPERPLPRHKGGGGNNRRGGYRGGNRNRNNSHGNGRGGYSHNGRNRD
RDRNGGRGDRKSNGYKGRSRDDNRSSNRNHDEGRKQSSKRSYTIRTND
NT seq 1587 nt   +upstreamnt  +downstreamnt
ttgaagtttacagaactaggcttatccgatagcctacttaaagcagttaatcgggccgga
tacgaagaagcgaccccgattcaagccgaaaccattccaatggttctagaaggcaaagat
gtgattggtcaagcacaaaccggtactgggaagaccgccgcgtttgcattaccaatctta
caacgcttggattttgataaccataacattcaagcattagttgtttcaccaacgcgtgaa
ttagcaatccaaactcaggaagaaatcttccgcttaggtaaagacgaacgggcgaaagtc
caagtcgtttacggtggtgctgatattcggcgccaaatcagaaatctgaagcaaaaccca
caagtaatcgtcggaactcctggccggttgcttgaccacattcgtcggggcacggtcaag
ttagaccacgtcaagatgttagttcttgatgaagctgacgaaatgttaaacatgggtttc
ttggaagatatcgaatcaattatcaaacaagtgccggatgaacgccaaactatgttgttc
tccgcaacgatgccacctgaaatcaaacgcattggtgtgcagttcatgaaggaaccgcat
cacgttaagatcaaatcaaaagaaatgactgctgatacggtcgatcaatattacgttaaa
gccaaagaatttgaaaagttcgatattatgacccggttgtttgatgttcaggcacctgaa
ctcacaatcgtgtttggtcgaacgaaacgtcgagttgacgaattatcaaagggtctcgaa
gcacgtggttataatgccgctgggattcatggtgatttgagccaacaacgtcggacgcaa
atcatgcgtcaattcaaggctggtaaattggatattttggttgcaaccgatgtggctgct
cggggacttgatgtttctggtgtgacccacgtttacaattacgatattccacaggatccg
gacagttatgttcaccggattggccgtactggccgtgccggacacaagggtgtttcatta
acttttgtaacaccaaacgaaatggaatatttgcgggtcatcgaaaagttgaccaagaag
cggatgttaccattgaagccaccaactgaatctgaagcttttgctggccaattagctgct
gcagaagcgaatgttgattcgttagttgctaagacttcgactgaaaagtatgctgatcaa
gctgctgaattattacaaaaatacgatgctactgatctagttgctgccttgttaaatgac
ttaactaaggacgacgcctcagccgtacccgttaagattacgccagaacgcccattacct
cgtcacaaaggtggcggcggtaacaaccggcgtggcggatatcgtggcggtaatcgcaac
cgcaataacagtcatggcaatggtcgtggcggttattctcacaatggtcgcaatcgcgac
cgtgatcgtaacggtggccgtggcgatcggaagagcaatggttataaaggtcgcagtcgc
gatgataaccggagcagcaaccgcaaccatgatgaaggtcgcaagcaaagcagcaagcgg
agctatacgatccgcaccaatgattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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